BAC Information

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BAC

Clone NameMSMg01-483N15
Chromosome3 (Build37)
Map Location 131,743,387 - 131,743,948
singlet/doubletsinglet
Overlap genenone
Upstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
Downstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483N15.T7 (MSMg01no483_n15.b1)MSMg01-483N15.TJ (MSMg01no483_n15.g1)
ACCAG563680AG563681
length1,220782
length of high quality
(start - end)		---562 (79 - 640)
definitionCHROMAT_FILE: MSMg01no483_n15.b1 PHD_FILE: MSMg01no483_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:12 2005CHROMAT_FILE: MSMg01no483_n15.g1 PHD_FILE: MSMg01no483_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTCACACACGCCGCCCGCTGCTATNCTACTGATCACGAACAGTGGAGA
GATTTTCTCCACTCACCAGCANGTGAGCTGCGTTNNCGTGTTCTTAGGCT
CCTCACCCTCACACAGCCANAGCACACACCAATTATTGCAGATAGGGATT
GTGTGTGTGTGTGTCTGCACGCCGCCACGCGCAGGAGTAGTTGACGATGC
TTTAATAGCGTGAGCGTCAGCGGCGTGACGCAGGGCGTGGGGAGGAGCAC
GCCAGAGACGGGTGTGATTTCACATAGAGACAGACTCGCGCCGCACTGCG
CAACACATACCTCAACTCATCTTACCACGTCTACTACCCTATCTCTGCCT
GAAGGACCACTTCCGTCAGCCTCCTACCCATCGACCGCCAAGACCACACC
GTCTCTGTCTCGTCCACTCACTCTCGTCACACGATTCAGCCGCCGTCGGG
CACGTCATACGCGAGGACGGGAGTTCGCTATGTAATTCCGCGGGCGCCGT
GTGTGTTGGGCGGTGCGTGTGCTGTGTGGCGCGCCGTGTATCGCGCGACA
TATGTCGTCGTGTTTTATTATACGCCGCTAGACCGCCGACCGGATATAAT
CACGCAAAGAGGGTGNAGCTCCATATATGATAATATTAACACATACATAG
CCGGCGTGAGCGCCGCCGCGCCAGCCGTATCCACAAGTGGTCTCATAGTT
TGTCGCCACCCTCGTCAGAGAGTGGCGAACGTAGAGTGGCGAACGCTGTC
AATGAACCACCCTTAACAAGTAAATATAGTTTGTGACGAGCGCTGCCGCC
AGCACGCCTAATGTTTAAGGCGCGCTGGGTTCTGGCNACGCGGCCTGCCC
CCCCGCGCGACATAGAGACGAGGCAGCGATGTGAGCGCGCAGGCGAAGGG
GTGGAGATGAAGACGAGACATTACGCTACACTCGCGGGACTACAACAGGA
CGAGTGTAGTCCACTAGTGGCGAGCCGAGTGAAAGCACTACGTATTCATG
AGACGAACGCCCGCGGCCAGAGAGAGGGAGGGAAGAGGACAGGACGCGCT
TGCTCCACGACAGAACAGAACTCAGCGTATATTTTAATTCGCTTACAGCG
CTGTGCGTTGTCACGAATACTAAATCACGCGGCCGCGCAACCAGAGTTTA
TGCGCCCCGCGAGCGATGGGCTATAGAGAGTATCTCACTGATTATGACAG
CCACGCGCCGCACCAAATAG

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGAACTGAGTCCAGACATC
TCTAGCCCAGATTATCTAAACGTTATTGTTTTCCAGGACATAAGGTGTGT
ATAACAACAGAAAATGTGAATCAAAAGGAGAAATGGAGATTTGAGTTTGT
GGAGGTTGTTTCTGATTCCAAGCCCACTTATGGTCGCTTCCATGCACAAG
AGCCAATACAAATTTATCTACTTCAGTCTTAGAATGTATGATTTAGGTTT
TTAGAAAGTCTTGTGTTTAGACTACAAAGAAACTGTGTAGCAATTTTCTT
CATTTGGATTCAGAGAAAACACTGGGAAGATGACTGATAAATCAAGGTTC
AAGAAAATCAGACATTGGCCAGAAAGTTGTATCTTTGATTGTTTCATTGT
GAGATCCCCTCATCCATTTCACTTGTACATGTGTGTGGCAAGCCTGGGTC
AATGGCTCGCACGTATGTGATGAGGTCTTTTGTATTAGCTCATCATAGAT
GAAGGCAGGACACAGTCAATCGTGTAAGCTAAGGCAAACATCACATATGA
GATGCACATTTTTGTCCTCATATCTAAATTTATTCCTCAAAATATTTGTG
CTCATTTATATCTGTTAAAATCAATTTAAACACAGTTGATAGAAACACGT
GTTGTTCCTTANGCANGATGAGTGGCTTCAAATTCCTATGTGTTAAGAAC
CAAATTGTGAGGATCACAGGGTAACAGGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_n15.g1 MSMg01no483_n15.g1 CHROMAT_FILE:
MSMg01no483_n15.g1 PHD_FILE: MSMg01no483_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:12 2005
         (562 letters)



>mm_chr3_131743187_131744148
          Length = 962

 Score = 1079 bits (558), Expect = 0.0
 Identities = 561/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgaactgagtccagacatctctagcccagattatctaaacgttattgttttccagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgaactgagtccagacatctctagcccagattatctaaacgttattgttttccagga 260

                                                                       
Query: 61  cataaggtgtgtataacaacagaaaatgtgaatcaaaaggagaaatggagatttgagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaggtgtgtataacaacagaaaatgtgaatcaaaaggagaaatggagatttgagttt 320

                                                                       
Query: 121 gtggaggttgtttctgattccaagcccacttatggtcgcttccatgcacaagagccaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaggttgtttctgattccaagcccacttatggtcgcttccatgcacaagagccaata 380

                                                                       
Query: 181 caaatttatctacttcagtcttagaatgtatgatttaggtttttagaaagtcttgtgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatttatctacttcagtcttagaatgtatgatttaggtttttagaaagtcttgtgttt 440

                                                                       
Query: 241 agactacaaagaaactgtgtagcaattttcttcatttggattcagagaaaacactgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactacaaagaaactgtgtagcaattttcttcatttggattcagagaaaacactgggaa 500

                                                                       
Query: 301 gatgactgataaatcaaggttcaagaaaatcagacattggccagaaagttgtatctttga 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gatgactgataaatcaaggttcaagaaaatcagacaatggccagaaagttgtatctttga 560

                                                                       
Query: 361 ttgtttcattgtgagatcccctcatccatttcacttgtacatgtgtgtggcaagcctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttcattgtgagatcccctcatccatttcacttgtacatgtgtgtggcaagcctggg 620

                                                                       
Query: 421 tcaatggctcgcacgtatgtgatgaggtcttttgtattagctcatcatagatgaaggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaatggctcgcacgtatgtgatgaggtcttttgtattagctcatcatagatgaaggcag 680

                                                                       
Query: 481 gacacagtcaatcgtgtaagctaaggcaaacatcacatatgagatgcacatttttgtcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacacagtcaatcgtgtaagctaaggcaaacatcacatatgagatgcacatttttgtcct 740

                                 
Query: 541 catatctaaatttattcctcaa 562
           ||||||||||||||||||||||
Sbjct: 741 catatctaaatttattcctcaa 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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