BAC Information

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BAC

Clone NameMSMg01-483P09
Chromosome3 (Build37)
Map Location 138,733,604 - 138,734,015
singlet/doubletsinglet
Overlap geneRap1gds1
Upstream geneMttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771
Downstream geneEG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483P09.T7 (MSMg01no483_p09.b1)MSMg01-483P09.TJ (MSMg01no483_p09.g1)
ACCAG563764AG563765
length746880
length of high quality
(start - end)
413 (326 - 738)---
definitionCHROMAT_FILE: MSMg01no483_p09.b1 PHD_FILE: MSMg01no483_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:21 2005CHROMAT_FILE: MSMg01no483_p09.g1 PHD_FILE: MSMg01no483_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCATCATAATTTGCGGCCGCTAAAAGACTCAAATCTGAACAGGATC
CGCGGAATTCAACCTACGAAAACAGGGGNTNGNNTTCATATATTTGTTCG
TCATATATTTCTTTTTTTTTTTCTTTTTTCTGTTCAACAGTCTTGACTTT
GCCTCCTGGCCTGAAAGTCTAAAATATTTACCATCTGGCCCTTTACAGAA
AAAGCTTGCCAACGTCTGCTGCGTGGAGGTGTTATTCCCAATACCCGCTC
TTACCTGAGACTCTCTCAACGATGCAAACCAACTCAATCAGAACTGGGAG
CTGCCCAGTCATCGTGTTTTAAATAAGCTCTCTCCAGATGATTCTTAGGC
AAGCTAAACTTTGAAAATGACTACTTTAAAAATTAAGATTTTTGGAATGT
TTTATCCTCCCCCCCCACACTATTTCTTTGAATCAGTAAAATAGGGAGTG
TGTCACCCTATTAACTGTTAAGAAGATTAAATTTTAAGTTCTATAAAGTG
CAACATGGTAACTGGCATCCACAGGGGGTAACTACTGCTTCAGTATGGTC
TGAAGACTACTGGCCCAGGAGGCTTGTCCATTCATTTTTAGAAAATCTGA
GACAGTTATTAAAACCATTATTAAAAATTAAATGATAGGCAGTTAGATAA
GACACATTAAAATGGGTATATTAAGCAAAGCACCACACTTTTCACCATAG
TTTATTATTGTGTCCATGAAATTATTATTTCCATAAGGTGAGTATA
GTCGTATCGATGATGTGTGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGATTACCACTACATG
TGCGTACCCCTTTGCTTAATTTACACACAACAATCTCAGTTTGTAGAGAT
GAATAACACTCTATCTCGTCCCGTGGTTAGAACAGTCTTACTACGTTGAA
TGAATTCAATTCTTCTTCTGCTTTGCTATCATGATGTCGCTTAATAGAAG
TTGTAACAATAGCGTAGCATGACTTATTAAGACATCGAGTGTTGTTCAAT
GCTTTTCTCCATCTCAGGAGAACTACAAGAAGACCTTTTAATAGCTGTGA
AGTGTCCGCCGACACAGTATTTTGAGTATATGTAGTTAAAGCTAAGCTTG
TTGTTTTCTTCCGTTGACCTCTGATTGTATAGCATTGATTCGAGTTTTAC
TACTCCCTGCCTTGTGTGCGTTCCCTCATGATACTGTATCCCCGTTTCGC
ATTACACTACCATCCCTACGACCAGCACTTGGATCTCGTTTGACATATGG
CCACGCCGACCACCAGAACCATTGTAGAATCAATGCGCGACGCTTCAGAC
AGTTCCCTTGTTCGCTTTAAATGTGCTAGTTGCAACGGTTTACTAGTCCT
TCCTTTTTTTGTAGTAATTTTTCATCATTACAACCTTCTGTCATGCGTGT
GACCCGCTATGTCGGCGACCCTTCTATATGCATATTTCACCATTTATCCT
TGATATACCACCCCGACATCCTCGATACTACTCACCTTGGTGTTGACGAC
GCCGAAATTCGATAATCTCGTCTATTCCGCTCGCTACCGGTGGATAATTA
CACTTTGCTATTCAAGCCCTCCCCACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_p09.b1 MSMg01no483_p09.b1 CHROMAT_FILE:
MSMg01no483_p09.b1 PHD_FILE: MSMg01no483_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:21 2005
         (413 letters)



>mm_chr3_138733399_138734215
          Length = 817

 Score =  692 bits (358), Expect = 0.0
 Identities = 397/420 (94%), Gaps = 19/420 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctctccagatgattcttaggcaagctaaactttgaaaatgactactttaaaaattaagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctctccagatgattcttaggcaagctaaactttgaaaatgactactttaaaaattaagat 265

                                                                       
Query: 65  ttttggaatgttttatcctcccccccc-------acactatttctttgaatcagtaaaat 117
           ||||||||||||||||||||              | ||||||||||||||||||||||||
Sbjct: 266 ttttggaatgttttatcctc-------ttggagga-actatttctttgaatcagtaaaat 317

                                                                       
Query: 118 agggagtgtgtcaccctattaactgttaagaagattaaattttaagttctataaagtgca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agggagtgtgtcaccctattaactgttaagaagattaaattttaagttctataaagtgca 377

                                                                       
Query: 178 acatggtaactggcatccacagggggtaactactgcttcagtatggtctgaagactactg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acatggtaactggcatccacagggggtaactactgcttcagtatggtctgaagactactg 437

                                                                       
Query: 238 gcccaggaggcttgtccattcatttttagaaaatctgagacagttattaaaaccattatt 297
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcccaggaggcttgttcattcatttttagaaaatctgagacagttattaaaaccattatt 497

                                                                       
Query: 298 aaaaattaaatgataggcagttagataagacacattaaaatgggtat----attaagcaa 353
           |||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 498 aaaaattaaatgatgggcagttagataagacacattaaaatgggtatttatattaagcaa 557

                                                                       
Query: 354 agcaccacacttttcaccatagtttattattgtgtccatgaaattattatttccataagg 413
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcaccacatttttcactatagtttattattgtgtccatgaaattattatttccataagg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 817
Length adjustment: 9
Effective length of query: 404
Effective length of database: 808
Effective search space:   326432
Effective search space used:   326432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)