Query= MSMg01no485_d13.b1 MSMg01no485_d13.b1 CHROMAT_FILE:
MSMg01no485_d13.b1 PHD_FILE: MSMg01no485_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:05 2005
(605 letters)
>mm_chr3_125693298_125694303
Length = 1006
Score = 1023 bits (529), Expect = 0.0
Identities = 581/605 (96%), Gaps = 13/605 (2%)
Strand = Plus / Plus
Query: 4 gaattccctaatat---tatcgatacagaagcacacatgatatttttcttttgctgctat 60
|||||||||||||| || ||| |||||| ||||||| ||||||||||||||||||||
Sbjct: 204 gaattccctaatataaata--gattcagaagtacacatgctatttttcttttgctgctat 261
Query: 61 tatggttactagctcttgtttgctactatttattgaatgttatgtatggtctaaatactt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 262 tatggttactagctcttgtttgctagtatttattgaatgttatgtatggtctaaatactt 321
Query: 121 ttatttttgccatgtatttagcaatttatatacagaaataatggttacaaaatcatctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttatttttgccatgtatttagcaatttatatacagaaataatggttacaaaatcatctta 381
Query: 181 tatattttgaatcagtatttaacgtgcatcacatgactaatgaataagtataagactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatattttgaatcagtatttaacgtgcatcacatgactaatgaataagtataagactgaa 441
Query: 241 gttaaatccatttccaaggcttgaaaagatgactcatcagttaagagcatttgctgttct 300
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 gctaaatccatttccaaggcttgaaaagatgactcagcagttaagagcatttgctgttct 501
Query: 301 tataaaagttcagagttcagatttcaaaacccatagctgacagctcaaaactgcctttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 tataaaagttcagagttcagatttcaaaacccatagctgacagctcaaacctgcctttaa 561
Query: 361 ttccagctccacaggatctgatgcccgcttctagcctccacaatacccataccaacttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttccagctccacaggatctgatgcccgcttctagcctccacaatacccataccaacttgc 621
Query: 421 ttgtgtgcctgtgcacacaataaagattgaaaaataagccagttatgaagttgcatatat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 622 ttgtgtgcctgtgcacacaataaagattgaaaaataagccagttatgaagttgcatatgt 681
Query: 481 taaattttagagaaaaaggaagcataggctggtaccttctaaagtttcttccaagtgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taaattttagagaaaaaggaagcataggctggtaccttctaaagtttcttccaagtgagt 741
Query: 541 ccaaaaaaaaaaaaaaaaaaaaaaaacaaacctataccttaccatctgtacctcattcac 600
||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 742 ccaaaaaaaaaaatatac--------caaacctataccttaccatctgtacctcattcac 793
Query: 601 tccaa 605
|||||
Sbjct: 794 tccaa 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_d13.g1 MSMg01no485_d13.g1 CHROMAT_FILE:
MSMg01no485_d13.g1 PHD_FILE: MSMg01no485_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:05 2005
(643 letters)
>mm_chr3_125808302_125809344
Length = 1043
Score = 571 bits (295), Expect = e-167
Identities = 325/335 (97%), Gaps = 2/335 (0%)
Strand = Plus / Minus
Query: 309 atagtttttgtgtagggttg-agatcttgtgagtctttattctgtccaatttggcatgtg 367
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 1043 atagtttttgcgtagggttgta-atcttgtgagtctttattctgtccaatttggcatgtg 985
Query: 368 cattggttattaaacaagaatatgtgagcgttaatcaactaagcccacctataagttttt 427
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 984 cattggttattaaagaagaatatgtgagcgctaatcaactaagcccacctataagttttt 925
Query: 428 tcagtgttttctggaggattcttggctttgggtttggtgaacactagtagtctgctaaga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tcagtgttttctggaggattcttggctttgggtttggtgaacactagtagtctgctaaga 865
Query: 488 aaatattttaaaggtcttatctgaaagtataaaggatatccagtaggcactgaatgacta 547
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 864 aaatattttaaaggtcttatctgaaagtataaaggatattcagtaggcactgaatgacta 805
Query: 548 aggacactaaagaaagctcaaggtgacttacctttctgtagctgaaacatttcaactctg 607
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 804 agggcgctaaagaaagctcaaggtgacttacctttctgtagctgtaacatttcaactctg 745
Query: 608 caaagttctaatcaatgggagttacagagtcttca 642
||||||||||| |||||||||||||||||||||||
Sbjct: 744 caaagttctaaccaatgggagttacagagtcttca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
