BAC Information

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BAC

Clone NameMSMg01-486D02
Chromosome3 (Build37)
Map Location 35,846,610 - 35,846,958
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1
Downstream geneMccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486D02.T7 (MSMg01no486_d02.b1)MSMg01-486D02.TJ (MSMg01no486_d02.g1)
ACCAG565453AG565454
length731742
length of high quality
(start - end)
240 (85 - 324)349 (232 - 580)
definitionCHROMAT_FILE: MSMg01no486_d02.b1 PHD_FILE: MSMg01no486_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:25 2005CHROMAT_FILE: MSMg01no486_d02.g1 PHD_FILE: MSMg01no486_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCCCCCNNAACCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATGAAATTTTTCGGCAAATGGATGGATCTGGAGGA
TATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGGTATGCACT
CACTGGTAAGTGGATATTAGCCCAGAAGCTCAGAATGCCCAAGATTCAAC
TCACAAACCACATGAAACTCAGAAAAGGAGGACTATAGCGTGAATCCTTC
GATCCATCTTAAAAGGAGGGAACAAAATACCCATGGAAGGAGTTACAGAG
ACAAAGTGTGGAGTAGAAACTCACGAAATGACCATCCAGAGACTGACTCA
CTTGGGGATCCATCCCATATACAATCACCAAATGCAGACACTGATGCGAA
TGCTAACAAGAGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAC
ACTCTGCCAGTGCCTGACAAATACAGAGTGGATGCTTGCAGCCATCCATT
ACACTGAGCTTAGGGTCCCCAATGAAGGAGCTAGAGATAGGACCTAAGGA
GCTGAAGGGGTTTGCAGCTCCCTAGGAGGAACAACAATATGAACTATCTA
GGACCCCAGTGCTCCTAGGGACTAAACCGACAACCTAAGAGCACATATAG
CAAGACTCATGGCTCCAGCTGCATATGCAGCAGAGGATGGCCTAGTCAGA
CATCAGTGAGGCGAGAGGCCCTTTGTCATAT
NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGAAAATTATTTAG
ATTATCAGATGGAATACACACACAATGATATAGTTTAGGAGGAGGGAGAA
AGTGTCTCAGCATGCTGAGTCAGAGTCTTGTGGTTCCCGCACCAGCTGTG
AAACTAGAACAAAAGAACACAGCCATCTCACCTGCTAGGAGGAAGACAAT
GAGAGGCAGAGAGACAGATGGTAGACACATCCTGCTTCCTACAAACATAA
TCAAAGGGTAGGGACAAATAAATTTGATTTAATTGTTTTTAAGGACAGAA
GGGAGATTGAATGAAAAAATGCTTTAAAGAAATTTAAAAGTCTTGCCAAG
GCAAAGTCTCAAAATCTTTGAATGTTGTTCACATGGGATTTCTAGGATTG
CTTTTGCCTGGTTCAACATAAATAGAGCCTGGAAGTAGGCTTATACAGTA
AGTAGACATAGATAATAAATATTGAGGCTTTCAGTACTTAAAAGTTAGAT
TGGAAAGCAGGGGTCAGGGAGCCTAATCTACCTCAGACAGTAGAAACTTA
GGCCTTGAGAATTATAGCCGGAGTAGTAGTGGCGCACGCCTTTAATCCCA
GCACTTGCGAGGCAGACGCGGGTGGATTTCTGAGTTCAAGGCCAGTCTGG
ACTACGGAGTGAGTTCTAGGAAAGCCGGTGATATTCTAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_d02.g1 MSMg01no486_d02.g1 CHROMAT_FILE:
MSMg01no486_d02.g1 PHD_FILE: MSMg01no486_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:25 2005
         (349 letters)



>mm_chr3_35846410_35847158
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctaggaggaagacaatgagaggcagagagacagatggtagacacatcctgcttccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgctaggaggaagacaatgagaggcagagagacagatggtagacacatcctgcttccta 490

                                                                       
Query: 61  caaacataatcaaagggtagggacaaataaatttgatttaattgtttttaaggacagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caaacataatcaaagggtagggacaaataaatttgatttaattgtttttaaggacagaag 430

                                                                       
Query: 121 ggagattgaatgaaaaaatgctttaaagaaatttaaaagtcttgccaaggcaaagtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggagattgaatgaaaaaatgctttaaagaaatttaaaagtcttgccaaggcaaagtctca 370

                                                                       
Query: 181 aaatctttgaatgttgttcacatgggatttctaggattgcttttgcctggttcaacataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaatctttgaatgttgttcacatgggatttctaggattgcttttgcctggttcaacataa 310

                                                                       
Query: 241 atagagcctggaagtaggcttatacagtaagtagacatagataataaatattgaggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atagagcctggaagtaggcttatacagtaagtagacatagataataaatattgaggcttt 250

                                                            
Query: 301 cagtacttaaaagttagattggaaagcaggggtcagggagcctaatcta 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cagtacttaaaagttagattggaaagcaggggtcagggagcctaatcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)