Query= MSMg01no486_f07.b1 MSMg01no486_f07.b1 CHROMAT_FILE:
MSMg01no486_f07.b1 PHD_FILE: MSMg01no486_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
(623 letters)
>mm_chr3_64887885_64888907
Length = 1023
Score = 1133 bits (586), Expect = 0.0
Identities = 610/618 (98%)
Strand = Plus / Plus
Query: 5 gaattccacactcttaagccccttacccccataaaaacccctagttttcaagcctcgtgg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacactcctaagccccttacccccataaaaacccctagttttcaagcctcgtgg 264
Query: 65 ccaacatctgttatctcctgtgtaggatacatgtcggcccggagctccgtaattaaacgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaacatctgttatctcctgtgtaggatacatgtcggcccggagctccgtaattaaacgt 324
Query: 125 cctcatgtaattacatcaagatggtactctgttcgtgattcttgggtgcacgccgaatcg 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 cctcatgtaattacatcaagatggtagtctgttcgtgattcttgggtgcacgccgaatca 384
Query: 185 ggagttgagtgggggtttccccactaggttctatcaacagccttcagatgaagatgtaga 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagttgagtgggggttttcccactaggttctatcaacagccttcagatgaagatgtaga 444
Query: 245 actctcagttcctcttagatgatccttcctagacactgccttgatcctgccttgatgata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actctcagttcctcttagatgatccttcctagacactgccttgatcctgccttgatgata 504
Query: 305 atggactgaacttccaaacctgtaagccagctccaattaaatgttgtccttataagagtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggactgaacttccaaacctgtaagccagctccaattaaatgttgtccttataagagtt 564
Query: 365 gccttgttcatggtgtctgttaacagcagtaaaaccctaagacaggtcctaaacatggag 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 gccttgttcatggtgtctgttaacagcagtaaaaccctaagacaggtcctaaccatggag 624
Query: 425 ccccttgatgtcaacactgctagcttttctttctaattgcttctttcagatgaatagtga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccccttgatgtcaacactgctagcttttctttctaattgcttctttcagatgaatagtga 684
Query: 485 cagtcctcaggtacagagccaccctttgtggactagagtacttatatctcccttcaggga 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagacctcaggtacagagccaccctttgtggactagagtacttatatctcccttcaggga 744
Query: 545 tgttcccaggacagtatgccaataatttcggcgttaaattttccatgagacctatgtccc 604
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 745 tgttcccaggacagtatgccaataatttcggcattaaattttccatgagacctatgtccc 804
Query: 605 acgagtctttctcacttc 622
| ||||||||||||||||
Sbjct: 805 atgagtctttctcacttc 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_f07.g1 MSMg01no486_f07.g1 CHROMAT_FILE:
MSMg01no486_f07.g1 PHD_FILE: MSMg01no486_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
(560 letters)
>mm_chr3_65034747_65035706
Length = 960
Score = 839 bits (434), Expect = 0.0
Identities = 440/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 1 ctcaggagttcagacatttttagcactgatgtccagcctctgtaatccttctttcccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcaggagttcagacatttttagcactgatgtccagcctctgtaatccttctttcccttt 517
Query: 61 gaattatcactgacagatagttcatcttcttcccctggaggcattaaaagcaaatgagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattatcactgacagatagttcatcttcttcccctggaggcattaaaagcaaatgagca 457
Query: 121 gctctcatttgggaaccatgaaagaattaattatggattcaccacaactctgaggtgttt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctctcatttgggaaccatgaaaaaattaattatggattcaccacaactctgaggtgttt 397
Query: 181 aaaaaccatgactaacacagagtccctaatgaggagggtggccaaggagcatctgctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaaaaccatgactaacacagagtccctaatgaggagggtggccaaggagcatctgctgcc 337
Query: 241 cttgaggggtctggtggacagtatagcgatggtgcaggagacagacctggaggaaggggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cttgaggggtctggtggacagtatagcgatggtgcaggagacagacctggaggaaggggg 277
Query: 301 tgtgttaggaaggcagtgcagtcatttgacagagtttctgtcatggtagattgcagatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtgttaggaaggcagtgcagtcatttgacagagtttctgtcatggtagattgcagatgg 217
Query: 361 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 157
Query: 421 cttcttcttctttcttcttctt 442
|||||||||| |||||||||||
Sbjct: 156 cttcttcttc-ttcttcttctt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 195
Number of extensions: 89
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
