Query= MSMg01no486_n07.b1 MSMg01no486_n07.b1 CHROMAT_FILE:
MSMg01no486_n07.b1 PHD_FILE: MSMg01no486_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:14 2005
(611 letters)
>mm_chr3_67605708_67606718
Length = 1011
Score = 944 bits (488), Expect = 0.0
Identities = 559/612 (91%), Gaps = 46/612 (7%)
Strand = Plus / Minus
Query: 1 gaattcaatttgattccaggtcagccacatgttaacttgagaccctggacatactgcctg 60
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 939 gaattcaatttgaatccaggtcagccacatgctaacttgagaccctggacatactgtctg 880
Query: 61 ttaaagcccagaagagcccagatagccaacatggcagccataaccgtatgtggctgttgc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttaaagcccataagagcccagatagccaacatggcagccataaccgtatgtggctgttgc 820
Query: 121 gcactccgaatgcagccattctgaatgcagagaccctgcatgtgtgacatactcacacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gcactccgaatgcagccattctgaatgcagagaccctgcatgtgtgacatactcacacag 760
Query: 181 tacctgagtattaaaaaactgttaatatttatacactgattacctgtgacatttcagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tacctgagtattaaaaaactgttaatatttatacactgattacctgtgacatttcagata 700
Query: 241 ctttaagcaaaatatccaat-aattaattttaccttccttttactttttttttaaatatg 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctttaagcaaaatatccaataaattaattttaccttccttttactttttttttaaatatg 640
Query: 300 gataccagtgctgcaaacatgattcagtggctaatggcatgtgttgctattagaaaagaa 359
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 639 gataccagtgctgcaaacatgattcagtggctaatggcatatgctgctattagaaaagaa 580
Query: 360 ttggattcagctcccaatagtaagaccgcagttcacaactgtcagccagggggtttatac 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttggattcagttcccaatagtaagaccgcagttcacaactgtcagccagggggtttatac 520
Query: 420 tccttctctgaactcttcaggcatcaggcacacataacataacaaaataatatgaaatac 479
|||||||||||||||||||||||||||||||||
Sbjct: 519 tccttctctgaactcttcaggcatcaggcacac--------------------------- 487
Query: 480 acataacataacaaaaatatgaaatacacataacataacaaaataaatagataaataaac 539
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ------------------atgaaatacacataacataacaaaataaatagataaataaac 445
Query: 540 aaataagaataccataaattccaggcacatatgtgatacacttaacataataaaataaat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaataagaataccataaattccaggcacatatgtgatacacttaacataataaaataaat 385
Query: 600 ataaataccata 611
||||||||||||
Sbjct: 384 ataaataccata 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_n07.g1 MSMg01no486_n07.g1 CHROMAT_FILE:
MSMg01no486_n07.g1 PHD_FILE: MSMg01no486_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:14 2005
(605 letters)
>mm_chr3_67478806_67479810
Length = 1005
Score = 1170 bits (605), Expect = 0.0
Identities = 605/605 (100%)
Strand = Plus / Plus
Query: 1 aatcgtgaagtaagaatagtgaatcatggtttctgcatcagatttgtttagcttatcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcgtgaagtaagaatagtgaatcatggtttctgcatcagatttgtttagcttatcagt 260
Query: 61 atttgataaatcaataacatgtggtagacaccattacagatctcagctctgcagtgagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgataaatcaataacatgtggtagacaccattacagatctcagctctgcagtgagaa 320
Query: 121 caaaaccaatgaggggcctactatagaatttgggctacgaacatagacgagggctaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaccaatgaggggcctactatagaatttgggctacgaacatagacgagggctaaacc 380
Query: 181 accattactcagggaaggaaaataaaagagcccaaatgtaacaggttaatgtgaaaaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accattactcagggaaggaaaataaaagagcccaaatgtaacaggttaatgtgaaaaccc 440
Query: 241 tctggagagtttttagttgtcagaactttgagtcacaaatgttttcaaaatgcaccatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggagagtttttagttgtcagaactttgagtcacaaatgttttcaaaatgcaccatgt 500
Query: 301 gtcaagaattgtactaaagttgttgataaaatgtgttattaaaggaaaaatggtccatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaagaattgtactaaagttgttgataaaatgtgttattaaaggaaaaatggtccatga 560
Query: 361 catcgtaagagttgacacccaaactgcaactttaagccttttgaccccagttttctgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcgtaagagttgacacccaaactgcaactttaagccttttgaccccagttttctgagt 620
Query: 421 atttcagagaattgcaagggtgaatcaagaaggagggagtgagaggggaattatatttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcagagaattgcaagggtgaatcaagaaggagggagtgagaggggaattatatttta 680
Query: 481 aaatgttggcaaaccaaagtgtagacaagtggagtcacaatgtcaaaggagacagaagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatgttggcaaaccaaagtgtagacaagtggagtcacaatgtcaaaggagacagaagtc 740
Query: 541 atgtgttttgaggtattgctgaaggaactgtagaaaaatgtaactgtacagaggcattct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtgttttgaggtattgctgaaggaactgtagaaaaatgtaactgtacagaggcattct 800
Query: 601 aactg 605
|||||
Sbjct: 801 aactg 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
