CGGCNNCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTGTTTTTTCCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGAT
ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTGGTCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTT
GGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCC
ATTGCTGTTCTGTTCAGGAATCTTTCCCCTGTTTCCATATCTTCAAGGCT
TTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAA
GTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGA
TCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATT
GTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGA
AGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTA
TTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCGGTTTTTAT
CACAATTGCCCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAG
AGGTTCTTTTATCCTTGAGAAGAGTTTTT

NNNNTTTTAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTAC
ACAGAGAAACCCTGCCTCAAACAAACCAACCAACCAACAAACACCAAAAC
AAACAAACAAACAAAAAAAACCCTCAAATACACAAATTAAAATAATTTTA
GAAATGTGTTGTCTATAATTAAACGTAATCATTAGTATCCCTGGAGAGAT
GACTCCGTAGTTAAGAGCACTGGCTGCTCTTCCAGAGAACCTGGGTTCAA
TTCCCAGCACCCACATGGCAGATCACAGTTGTCCAGTTCCACAGCCATAC
ACACAGGCAAAACACCAACGTACATGAAATAAAAATAAATATAATCTAAG
GAGCTGAACTGGACACAAAAGCAAATACACACAGTCACTAACAAGATTTT
GTTTCCAGCTTTTAACAACGTACCATATCTACATGCATGGAATTCCGGTC
GGCCTCACTGTACACAGCCACCGACTGCACACCCATCTTTTTGGCTGTTC
GTATCACCCTGCAGGCAATTTCTCCTCTGTTTGCAATGAGGACCTTGGTA
ATGCTTCCTCCTGTTAGAAGCCATAAGGATAAGACCCAAATGTTATTGGG
AAATAAGAAATTAAGATATGTTATGAGTCATCCCATAAGGGGTTGTTTTT
AATAAAAGTGCGCATGAATGGCTAANATTACCGTTTT

Query= MSMg01no487_c04.g1 MSMg01no487_c04.g1 CHROMAT_FILE:
MSMg01no487_c04.g1 PHD_FILE: MSMg01no487_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:39 2005
         (655 letters)



>mm_chr3_35894117_35895166
          Length = 1050

 Score = 1137 bits (588), Expect = 0.0
 Identities = 633/655 (96%), Gaps = 12/655 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgcctcaaacaaaccaaccaaccaacaaac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 208 caggacagccagggctacacagagaaaccctgcctcaaacaaacaaaccaaccaacaaac 267

                                                                       
Query: 61  accaaaacaaacaaacaaacaaaaaaaaccctcaaatacacaaattaaaataattttaga 120
           |||||||||||       ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 accaaaacaaa-------acaaaaaaaaccctcaaatacacaaattaaaataattttaga 320

                                                                       
Query: 121 aatgtgttgtctataattaaacgtaatcattagtatccctggagagatgactccgtagtt 180
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aatgtgatgtctataattaaacgtaatcattagtatgcctggagagatgactccgtagtt 380

                                                                       
Query: 181 aagagcactggctgctcttccagagaacctgggttcaattcccagcacccacatggcaga 240
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 381 aagagcactggctgctcttccagagaatctgggttcaactcccagcacccacatggcaga 440

                                                                       
Query: 241 tcacagttgtccagttccacagccatacacacaggcaaaacaccaacgtacatgaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacagttgtccagttccacagccatacacacaggcaaaacaccaacgtacatgaaataa 500

                                                                       
Query: 301 aaataaatataatctaaggagctgaactggacacaaaagcaaatacacacagtcactaac 360
           ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||
Sbjct: 501 aaataaatataatctaaggagctgaactggacacaaaa-----tacacacagtcactaac 555

                                                                       
Query: 361 aagattttgtttccagcttttaacaacgtaccatatctacatgcatggaattccggtcgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aagattttgtttccagcttttaacaacgtaccatatctacatgcatggaattccggtcgg 615

                                                                       
Query: 421 cctcactgtacacagccaccgactgcacacccatctttttggctgttcgtatcaccctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cctcactgtacacagccaccgactgcacacccatctttttggctgttcgtatcaccctgc 675

                                                                       
Query: 481 aggcaatttctcctctgtttgcaatgaggaccttggtaatgcttcctcctgttagaagcc 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 676 aggcaatttctcctctgtttgcaatgaggaccttggtaatacttcctcctgttagaagcc 735

                                                                       
Query: 541 ataaggataagacccaaatgttattgggaaataagaaattaagatatgttatgagtcatc 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 736 ataaggataagacccaaatgttactgggaaataagaaattaagatatgttatgagtcatc 795

                                                                  
Query: 601 ccataaggggttgtttttaataaaagtgcgcatgaatggctaanattaccgtttt 655
           ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 796 ccataaggggttgtttttaataaaagtgcacatgaatggctaaaattactgtttt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1050
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1040
Effective search space:   670800
Effective search space used:   670800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)