Query= MSMg01no487_i07.b1 MSMg01no487_i07.b1 CHROMAT_FILE:
MSMg01no487_i07.b1 PHD_FILE: MSMg01no487_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:09 2005
(669 letters)
>mm_chr3_81200918_81201990
Length = 1073
Score = 1185 bits (613), Expect = 0.0
Identities = 658/675 (97%), Gaps = 7/675 (1%)
Strand = Plus / Minus
Query: 1 tgaaagtccccgctttcgctgtgacctctttaatcctaacaagtatgggagcaagagact 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 726 tgaaagtccccgctttcgctgtgacctctttaatcctaacaag-atgggagcaagagact 668
Query: 61 agctggagaaaattgtcttagggtgttcagctataaccctctgagtgtagagttgaactg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 667 agctggagaaaattgtcttagggtcttcagctataaccctctgagtgtagagttgaactg 608
Query: 121 aattcttcacagacagccttgaatttcaaaagat---ccaagagcatgagttttgagaat 177
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 607 aattcttcacagacagctttgaatttcaaaagatccaccaagagcatgagttttgagaat 548
Query: 178 ttgaaactaaatagctcatgacaaattccaaaacaatcaagttgttctccaaagaaaatc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttgaaactaaatagctcatgacaaattccaaaacaatcaagttgttctccaaagaaaatc 488
Query: 238 atgggcaggtgatctgtactgagcactttcaagtgtgactaagctcattaaagcttatgg 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atgggcaggtgagctgtactgagcactttcaagtgtgactaagctcattaaagcttatgg 428
Query: 298 agaaatcctggcctgtgtatagagagggtttgctgattcagcacagaccggcaggcaaga 357
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 427 agaaatcctggcctgtgtatagagagggtttgctgattcagcacagagtggcaggcaaga 368
Query: 358 gggtgatacaaa--taggcaaatagagttcattactgaggcttgttcgaggtccatgagt 415
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 367 gggtgatacaaatgtaggcaaatagagttcactactgaggcttgttcgaggtccatgagt 308
Query: 416 gtcaaagagagtctacttttattccagttcataacttactatgatttcaaatcttgcata 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtcaaagagagtctacttttattccagttcataacttactatgatttcaaatcttgcata 248
Query: 476 tattttgtagtaaagattatctagaatgttcaagccaaaagaaggctaggcaaaggtgag 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tattttgtagttaagattatctagaatgttcaagccaaaagaaggctaggcaaaggtgag 188
Query: 536 agaggagagcagatgtgggaagggaggttggtggatggggtaaccaggaagtaagatatc 595
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 187 agaggagagcagatgtgggaagggaggttggtggagggggtaaccaggaagtaagatatc 128
Query: 596 atttgagatgtaaacatatggaatgagtaataaaaaaaaa-ttaaagtactctatcaggc 654
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 127 atttgagatgtaaacatatggaatgagtaataaaaaaaaaattaaagtactctatcagga 68
Query: 655 gaaaagctcttgaac 669
|||| ||||||||||
Sbjct: 67 gaaaggctcttgaac 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1073
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1063
Effective search space: 700517
Effective search space used: 700517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_i07.g1 MSMg01no487_i07.g1 CHROMAT_FILE:
MSMg01no487_i07.g1 PHD_FILE: MSMg01no487_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:09 2005
(641 letters)
>mm_chr3_81094096_81095136
Length = 1041
Score = 1180 bits (610), Expect = 0.0
Identities = 634/642 (98%), Gaps = 2/642 (0%)
Strand = Plus / Plus
Query: 1 aaaggagggtaattcatctgccaggtcctgcct-atccttgtctgcaaagagaaccgcat 59
||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct: 201 aaaggagggtaattcatctgccaggtcctgc-tcatccttgtctgcaaagagaaccacat 259
Query: 60 cgtctccctccaatctagggaaatctatctcatcatggtttcagtctaaattgtttcatg 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttctccctccaatctagggaaatctatctcatcatggtttcagtctaaattgtttcatg 319
Query: 120 caagctcatgttttcagggtagagtcctcagcttgtgaggtgagaccaagctagatgaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caagctcatgttttcagggtagagtcctcagcttgtgaggtgagaccaagctagatgaag 379
Query: 180 tagatcactggagatgtttctttagtggtgtcttgtttgcagcactcctgtttctaagtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagatcactggagatgtttctttagtggtgtcttgtttgcagcactcctgtttctaagtg 439
Query: 240 aagagcaacctctgcaagagatctgcattatatttcttcaccatgctgccctctcagcaa 299
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagagcaacctctgcaagagatatgcattatatttcttcaccatgctgccctctcagcaa 499
Query: 300 caggagtggaccactgtttccagatatgtcatgcacatttacccagtagtgtaaaagaag 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggagtggcccactgtttccagatatgtcatgcacatttacccagtagtgtaaaagaag 559
Query: 360 acatgcccctgaaatgacatgctcccactgacatgatgatctgcccaaggacctggatct 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 acatgcccctgaaatgacatgctcccactaacatgatgatctgcccaaggacctggatct 619
Query: 420 aagtgatgcccatactgacctctgaaatattgaaccaaaatgaactgcattgtgtttcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagtgatgcccatactgacctctgaaatattgaaccaaaatgaactgcattgtgtttcat 679
Query: 480 ggcaggagtttaagccacagcagcaaatccatagaggacagcagagggagatgatgcggt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggcaggagtttaagccacagcagcaaatccatagaggacagcagagggagatgatgcggt 739
Query: 540 tctccaaggtgtgtggaggtttttgcaattattcctttcccatatgtatagcagagagca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctccaaggtgtgtggaggtttttgcaattattcctttcccatatgtatagcagagagca 799
Query: 600 cttccactgaagcccaccactcttggatctgtaaaagtctgg 641
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cttccactgaagcccaccactcttggatctgtaaaagtctgg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
