Query= MSMg01no489_i17.b1 MSMg01no489_i17.b1 CHROMAT_FILE:
MSMg01no489_i17.b1 PHD_FILE: MSMg01no489_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:49 2005
(238 letters)
>mm_chr3_95876127_95876764
Length = 638
Score = 398 bits (206), Expect = e-115
Identities = 227/234 (97%)
Strand = Plus / Minus
Query: 1 caggctcctaagctcagacagcagcctcagccctgatcagcactgaataccctatttata 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 434 caggctcctaagctcagacagcagcctcagccctgagcagcactgaataccctatttata 375
Query: 61 cccaggaactgtgtacttccaatactctctgcagcctccctccatctcccttcatgaatg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cccgggaactgtgtacttccaatactctctgcagcctccctccatctcccttcatgaatg 315
Query: 121 tgtttttctctgtagaatttatcaccatatacttattatatattttattttctgtctgcc 180
||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||
Sbjct: 314 tgtttttctctgtagaatttatcaccatataattattatgtattttatttacagtctgcc 255
Query: 181 tttccccacaaagctgagttgtatgggattagatatttctatattttattcaca 234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 254 tttccccacaaagctgagttgtatgggattagatatttctatattttatccaca 201
Score = 72.3 bits (37), Expect = 3e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 caggctcctaagctcagacagcagcctcagccctgat 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 111 caggctcctaagctcagacagcagcctcagccctgat 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no489_i17.g1 MSMg01no489_i17.g1 CHROMAT_FILE:
MSMg01no489_i17.g1 PHD_FILE: MSMg01no489_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:49 2005
(436 letters)
>mm_chr3_95705246_95706081
Length = 836
Score = 812 bits (420), Expect = 0.0
Identities = 432/436 (99%)
Strand = Plus / Plus
Query: 1 tgcagaagtagaatcagagaggacaaacagcctaaacagatggaatatctttggggtacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagaagtagaatcagagaggacaaacagcctaaacagatggaatatctttggggtacc 260
Query: 61 ctatcaagtagacttgaggttcagctatcctttctgtcattcacgttctcctctcacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatcaagtagacttgaggttcagctatcctttctgtcattcacgttctcctctcacact 320
Query: 121 ggaccttgctttgactccagataggtcattaattagaagttcagagggattgagttccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaccttgctttgactccagataggtcattaattagaagttcagagggattgagttccac 380
Query: 181 tgtccctagagtcacagtatcctgccagccttttcctcctgacctcaggctctgtccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtccctagagtcacagtatcctgccagccttttcctcctgacctcaggctctgtccagt 440
Query: 241 tttatttgcaggttgggggtaggactatttaggagaaagagagccagaaggatggcagcc 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagaggcaggttgggggtaggactatttaggagaaagagagccagaaggatggcagcc 500
Query: 301 agctcgctcattgtgcctctccccgcccagttttcttcatttccacagggatttacagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcgctcattgtgcctctccccgcccagttttcttcatttccacagggatttacagag 560
Query: 361 gacgcattggcttttttgctgaatcaggagatgtgggatttaatgattacagcagggtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacgcattggcttttttgctgaatcaggagatgtgggatttaatgattacagcagggtct 620
Query: 421 agcagccacttgtgta 436
||||||||||||||||
Sbjct: 621 agcagccacttgtgta 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
