BAC Information

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BAC

Clone NameMSMg01-490L08
Chromosome3 (Build37)
Map Location 85,503,329 - 85,661,206
singlet/doubletdoublet
Overlap gene9930021J17Rik
Upstream geneTmem154, LOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l
Downstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490L08.T7 (MSMg01no490_l08.b1)MSMg01-490L08.TJ (MSMg01no490_l08.g1)
ACCAG568877AG568878
length753740
length of high quality
(start - end)
283 (85 - 367)188 (433 - 620)
definitionCHROMAT_FILE: MSMg01no490_l08.b1 PHD_FILE: MSMg01no490_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:22 2005CHROMAT_FILE: MSMg01no490_l08.g1 PHD_FILE: MSMg01no490_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,660,927 - 85,661,206)(85,503,329 - 85,503,516)
sequence
TTTTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACT
AGGGCGGNAATCCACAGGGTACTAATATGAGGGTTCCACCATCCGAGCTC
TGCAGGCAGAGTTTGACTGCCCTTTGTTAGTCTCTGGCCCAGGCAGGTCC
CTCCTGAAGGGGCCTCGGTCCTGCTTTTCACTGTGTCATTGTGGCTTTGT
CCCTCCTCCACCTCAGACCAGTCCTTCTTAATCAACTGAATGAAATTTCC
ACCCCCTTTTTTGGAAAGTCTTAAATATCTCATTTATTATTTATAATATT
TATGGATTCTCCAATGTAGGTTTTTCTTTTTATGGGTAATGGAGTAGTGG
GAGTGGGGAGCAGGTTTTTAATTCGTAGCTGAGATGGAACCTGATAAACT
GCTTACAAAACTGTCCAGATGCACCCCCCCTTCTAGAACGTCATAAAGTT
TCAAGGGGTTTAGAAAAGTCTGAGGTCATGCCCTTCCTACTTTTGGGGGT
ATTAAAGTATCCTTTTTTACATTATGTGATTGTTAAAATATCTAACAATA
GCAATGGCTTCAAATGAGTTGTCTTTGCTTGGAAAAATAGGAAATTGGTA
ACTTAGCTGATCAAGTATATGTGTACAGCACATACTCATATCCACACGCA
CATACTTTTTTTTTTACAGACACATTGTACCCATACGCATACACGATTCC
TTTGCGCACGTTATAAATCGCCATATACTACTTTTGTATAATTATATATT
TAG
NNNCCCTATGATATGNGAGGTCTGGNGGNCGCCGGGTTTCGAACGCGCGN
GAACNANANAAGGATGCNGNGACGGAGGGCACNANGCAGAGACAGAAACC
ACACAGGGGNCGGCCAGAACAAACCCAANAANNCGAGNCANGGNGGNCAN
NNNCCNCCGNNANCCACAAACCGGCNCAGCANCNGGCACGGGANGGNCAC
AGCAGAGCANCNCANCAGAANGCAAGNCAAACAGAAACAAGGGGCAGCCC
NCCTTATTTGAAGCCAGCATGGGGCAAGAGACAGTCATGGTAAGCTAGTA
ACAAGCAGGCCAACCCCCTCTTTTTTTTTTCTCACCCACCANNNCCANAC
AACNCACCNGAAGTTTTTCTCACAGGGCGTTTTCTGCTGATCAATTTTGA
ATGTTCTCTTAGGGTGGCCCACCTTTAAGAATAAATGACTCACACCAAAC
TTCAGATGGGCTCTTTCCCTCTTGTGTCTGCACTTGTTTCCGAGGTAACC
CACCTGGCTTCCATGGATAAGATGGGGTTTTGTGTGAGTTTTGTTTTGTG
CCTTCTGTGTGAGGGAGGGTGAGGCCCTCTGTGCACTTGTTGGGATTGAA
GAGAGAAATCTAATTTCTCACTTCCAATCAGAAGTCACTGGAAGTTTAAT
TTCTTCCTCTATTTTTTTTTGAGAGCTCAGCAGATAGAATAGCATTACCT
GCCTCAGACTCTAANACAGAACTCTGTGCTCGCCTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_l08.b1 MSMg01no490_l08.b1 CHROMAT_FILE:
MSMg01no490_l08.b1 PHD_FILE: MSMg01no490_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:22 2005
         (283 letters)



>mm_chr3_85660810_85661492
          Length = 683

 Score =  464 bits (240), Expect = e-135
 Identities = 270/280 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaccatccgagctctgcaggcagagtttgactgccctttgttagtctctggcccaggc 60
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 397 tccaccgtccgagctctgcaggcagcgtttgactgccctttgttagtctctggcccaggc 338

                                                                       
Query: 61  aggtccctcctgaaggggcctcggtcctgcttttcactgtgtcattgtggctttgtccct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aggtgcctcctgaaggggcctcggtcctgcttttcactgtgtcattgtggctttgtccct 278

                                                                       
Query: 121 cctccacctcagaccagtccttcttaatcaactgaatgaaatttccacccccttttttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 277 cctccacctcagaccagtccttcttaatcaactgaatgaaatttccaccccccactttgg 218

                                                                       
Query: 181 aaagtcttaaatatctcatttattatttataatatttatggattctccaatgtaggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 217 aaagtcttaaatatctcatttattatttataatatttatggattctccaatgtaggtttc 158

                                                   
Query: 241 tctttttatgggtaatggagtagtgggagtggggagcagg 280
            ||||| | |||||||||||||||||||||||||||||||
Sbjct: 157 ccttttgaggggtaatggagtagtgggagtggggagcagg 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no490_l08.g1 MSMg01no490_l08.g1 CHROMAT_FILE:
MSMg01no490_l08.g1 PHD_FILE: MSMg01no490_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:22 2005
         (188 letters)



>mm_chr3_85503129_85503716
          Length = 588

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgactcacaccaaacttcagatgggctctttccctcttgtgtctgcacttgtttccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgactcacaccaaacttcagatgggctctttccctcttgtgtctgcacttgtttccg 260

                                                                       
Query: 61  aggtaacccacctggcttccatggataagatggggttttgtgtgagttttgttttgtgcc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaacccacctggcgtccatggataagatggggttttgtgtgagttttgttttgtgcc 320

                                                                       
Query: 121 ttctgtgtgagggagggtgaggccctctgtgcacttgttgggattgaagagagaaatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtgtgagggagggtgaggccctctgtgcacttgttgggattgaagagagaaatcta 380

                   
Query: 181 atttctca 188
           ||||||||
Sbjct: 381 atttctca 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)