BAC Information

Click to search

BAC

Clone NameMSMg01-491C07
Chromosome3 (Build37)
Map Location 54,810,285 - 54,810,449
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik
Downstream geneCcna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491C07.T7 (MSMg01no491_c07.b1)MSMg01-491C07.TJ (MSMg01no491_c07.g1)
ACCAG569207AG569208
length753826
length of high quality
(start - end)
249 (61 - 309)255 (63 - 317)
definitionCHROMAT_FILE: MSMg01no491_c07.b1 PHD_FILE: MSMg01no491_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:57 2005CHROMAT_FILE: MSMg01no491_c07.g1 PHD_FILE: MSMg01no491_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTAAACGACTCCTATAGTCGTAAATCCGCGGAATTCCATGATCGTT
GGCCCACTGACGTACTTCTTTGGCTGTGAAATGAGTTCCTTGGTCAGAAG
CAATACTGTGTGGAATACCATGACGATAGATAAGGCATTCTGTCAGTCCG
TTAATGGTGGTTTTAGCAGACGCATTACGTGCAGGAAAGGCAAATCCATA
ACCAGAATAAGTATCTACTCCAGTAAGAACAAAACGCTGTCCTTTCCATG
AAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGGTTGCTGGCTGGTCA
CCTCGAGGAATTTTGTTCATATCTGGGGCTCAGTGTTGGTTTCTGCTGTT
GGCAGATCTGGCAATCAGCAGCAGCTGTAGCCAAGTCAGCTTTGGTGAGT
GGAAGCCCGTGTTGCTGAGCCCAAGCATAACCTCCATCTCGACCACCGTG
GCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGGATGGCTGGGGAGA
GAGGCTGATTGTCCACAGAACGGGTCATCTTATCCACTTGATTATTGAAC
TCCTCCTCGGCTGAAGTCACCTTTTGATGAGCATTTACATGGGACACAAA
TATCTTCACATCCTTTGCCCATTTGGAGAGATCTATCCACATACTTCTTC
CCCAGATGTCTTTCTCACTAATTTTCCAATTGTGATTTTTCCAAGGCCCC
TGATCATCCAGCCAATCCATTGGGCTACAGGCCCATGAATCGGTGAATAA
ACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATCCACATGGAATATTGGCAAGCATATGCAATCTCTG
TGATTCTAAGTAGTTTTCTCAGACCTATAACCTCTGGGTGAGGACCTGGT
ACACACATGGCCTCAAACTCCAAAGCTTGTCTTATTGAGTGAATTATTTT
GATATTCACTAAAGAAACTAGGCTCTGTGGTAGGTTTTCTAATTTTTTAA
AAAAATATTTTATGGGCATGAGTGTATGTATGTATGTATGTATGTATGTA
TGTATGTATGTATGTATTTTGTTTGNNNNNNNNTNNNTTNNNNNTTTTTN
TTTTTTTTTTTTTNTNNTTTNNNTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNNTTATTTTTTNT
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTATATTTTATTTATNTTTTT
TATTATATAATTTTAATTATTTTTTTAATTTTTTCCTTATTTTTTTTTCC
TTTTCTCCTTTCTTATCTACCACCTATTGTAATTTTCTATTTTCTTATCA
TTTTACTTTCTATTTCTCTTTTTTCTTATAATTATATTCTTAATTTTCTT
TTTTTTTCTTACATTCTTCTCTATATTTTTTATTATCTCTTCATTATATT
TTTTTTGTCTTCCTATTACTGTCAATAAGAGTACAAATTCGATCGGTTAA
AGATTATAATAATTATGATCATCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_c07.g1 MSMg01no491_c07.g1 CHROMAT_FILE:
MSMg01no491_c07.g1 PHD_FILE: MSMg01no491_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:58 2005
         (255 letters)



>mm_chr3_54810085_54810739
          Length = 655

 Score =  319 bits (165), Expect = 9e-92
 Identities = 165/165 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccacatggaatattggcaagcatatgcaatctctgtgattctaagtagttttctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccacatggaatattggcaagcatatgcaatctctgtgattctaagtagttttctcag 260

                                                                       
Query: 61  acctataacctctgggtgaggacctggtacacacatggcctcaaactccaaagcttgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctataacctctgggtgaggacctggtacacacatggcctcaaactccaaagcttgtct 320

                                                        
Query: 121 tattgagtgaattattttgatattcactaaagaaactaggctctg 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgagtgaattattttgatattcactaaagaaactaggctctg 365



 Score =  172 bits (89), Expect = 2e-47
 Identities = 105/113 (92%), Gaps = 7/113 (6%)
 Strand = Plus / Plus

                                                                       
Query: 149 aaagaaactaggctctgtggtaggttttctaattttttaaaaaaatattttatgggcatg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aaagaaactaggctctgtggtaggttttctaattttttaaaaaaatattttatgggcatg 595

                                                                
Query: 209 agtgtatgtatgtatgtatgtatgtatgtatgta---tgtatg---tatgtat 255
           |||||||||||||||||| |||||||||| ||||   ||||||   |||||||
Sbjct: 596 agtgtatgtatgtatgta-gtatgtatgtgtgtaatatgtatgcagtatgtat 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)