Query= MSMg01no491_e19.b1 MSMg01no491_e19.b1 CHROMAT_FILE:
MSMg01no491_e19.b1 PHD_FILE: MSMg01no491_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:10 2005
(645 letters)
>mm_chr3_111484496_111485542
Length = 1047
Score = 1137 bits (588), Expect = 0.0
Identities = 631/652 (96%), Gaps = 12/652 (1%)
Strand = Plus / Minus
Query: 1 agcaggcatgattcacttactactttctgtctcacatatgtgtaggctatcagtgtttgc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 847 agcaggcatgattcacttactactttctgtttcacatatgtgtaggctatcagtgtttgc 788
Query: 61 agtcctcgtcaatgcttgattttaagcacgtgaatatctgataatacataaaattataca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 787 agtcctcgtcaatgcttgattttaagcatgtgaatatctgataatacataaaattataca 728
Query: 121 catacaacacactatatgtttgttcatatttatggattttatcaaaattcaaggggcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 catacaacacactatatgtttgttcatatttatggattttatcaaaattcaaggggcatt 668
Query: 181 attccaaagaagttcactctcttttcagtaattttatgttatttttcattattcaagctc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 attccaatgaagttcactctcttttcagtaattttatgttatttttcattattcaagctc 608
Query: 241 tgaacttattttt-------aaaactttatcatgtatctgaacgatttttaagttagaat 293
||||| ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 607 tgaac-----tttaaaaaaaaaaactatatcatgtatctgaacgatttttaagttagaat 553
Query: 294 ttattatctatactttacttgtgagaacttcaggctcagaaaataaagtatacccctgtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttattatctatactttacttgtgagaacttcaggctcagaaaataaagtatacccctgtg 493
Query: 354 gtactttatatagtaaaactgatcctacatattatatttatgatttagaacttgaaatta 413
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtactttatacagtaaaactgatcctacatattatatttatgatttagaacttgaaatta 433
Query: 414 gagaaacttttgttcgtactgatatagctaatcattatagctttaagcaaatactttgga 473
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 gagaaacttttgttcctactgatatagctaatcattatagctttaagcaaatcctttgga 373
Query: 474 aagaaatgacaatttttctctatatgtacatttgaatgtcagtatgcttagtcataataa 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 aagaaatgacaatttttctctatatgtacatttaaatgtcagtatgcttagtcataataa 313
Query: 534 ctggctaggtattcagatcatcacttgttaacattttatttcacttgtagttatatcttt 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctggctaggtattcagattatcacttgttaacattttatttcacttgtagttatatcttt 253
Query: 594 aaacttagatgcaatggatccaacaaataatcataaaaatagattgaggatt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaacttagatgcaatggatccaacaaataatcataaaaatagattgaggatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1047
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1037
Effective search space: 658495
Effective search space used: 658495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_e19.g1 MSMg01no491_e19.g1 CHROMAT_FILE:
MSMg01no491_e19.g1 PHD_FILE: MSMg01no491_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:10 2005
(555 letters)
>mm_chr3_111343652_111344606
Length = 955
Score = 888 bits (459), Expect = 0.0
Identities = 531/555 (95%)
Strand = Plus / Plus
Query: 1 tctggaaaatgaagatgtgcttctaaaaagtgaggccactctctagcccctctaacttca 60
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 201 tctggaaaatgaagaggtgcttctaaaaagtgaggcccctctctagcccctctgacttca 260
Query: 61 taattatcctatacatagatacattctgcttcctatttgatgttctactgctccaatata 120
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 taattatcctttatatagatacattctgcttcctattcgatgttctactgctccaatata 320
Query: 121 gagtctcatgtctttgatggaaccactgtaattaatttaattcacttgaacaaatccaca 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 321 gagtctcatgtctttgatggaaccactgtaattaatttaattcacacgaacaaatgcaca 380
Query: 181 ttaagtgggcagatagtgttatagagtcatggaatctaacagtgaaagaatgccgaattc 240
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct: 381 ttaagtgggcagatagtgttatagagtcatgggatcaaacagggaaagaatgccgaattc 440
Query: 241 ctccaattctccatgcaggagagatacgaaataagcaaagtcagtaatacgtaaggaaga 300
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ctccaatcctccatgcaggagagatacgaaataagcaaagtcagtgatacgtaaggaaga 500
Query: 301 ggacattcacagaaaacatacacagcatctcaatggtttaagatgaaagactgtttttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacattcacagaaaacatacacagcatctcaatggtttaagatgaaagactgtttttca 560
Query: 361 tccttgaaaataacaaacgcaataggaacaacatctatgaaggtctcaggataagagaaa 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttgaaaataacaaatgcaataggaacaacatctatgaaggtctcaggataagagaaa 620
Query: 421 tatgatgatattttatatggatgcattatgatgcatactgaaaaaaagattttgtttgat 480
|||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct: 621 tatgatgatattttatatggatacattatgatgcatactggaaaaaagattttatttgat 680
Query: 481 catgagaagtcactaaaagttcttaaataaaagggagttgcaatgtggggttacatagaa 540
||||||||||||| |||||||||||| |||||||||||| | |||||||||||||| |||
Sbjct: 681 catgagaagtcacaaaaagttcttaagtaaaagggagtttccatgtggggttacatggaa 740
Query: 541 ctaaaagagcataca 555
|||| ||||||||||
Sbjct: 741 ctaagagagcataca 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
