Query= MSMg01no491_f14.b1 MSMg01no491_f14.b1 CHROMAT_FILE:
MSMg01no491_f14.b1 PHD_FILE: MSMg01no491_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
(719 letters)
>mm_chr3_59814541_59815658
Length = 1118
Score = 1361 bits (704), Expect = 0.0
Identities = 713/716 (99%), Gaps = 1/716 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgatagatgtctccactgcagagtttgtttttcactgatccacatttgttt 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgatagaggtttccactgcagagtttgtttttcactgatccacatttgttt 263
Query: 64 acttttgtttttaagataggaactcatctatcttagtcttccctggaaagtactacttag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acttttgtttttaagataggaactcatctatcttagtcttccctggaaagtactacttag 323
Query: 124 ttggtaataagattttactcatgatcttctacctcttgagtgccatgatgaaatgcattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttggtaataagattttactcatgatcttctacctcttgagtgccatgatgaaatgcattt 383
Query: 184 gtctccagcctggtccatgtagtattagggttcaaactcggggcttcctgcaggctggga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtctccagcctggtccatgtagtattagggttcaaactcggggcttcctgcaggctggga 443
Query: 244 taatgtactagcaagtgaatcccagtgaaagccccttttgtcaggtgacattttatttat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatgtactagcaagtgaatcccagtgaaagccccttttgtcaggtgacattttatttat 503
Query: 304 ctttcatatgcaataaagtaaaaaaatgacagggataagtcaattgctacaacattttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttcatatgcaataaagtaaaaaaatgacagggataagtcaattgctacaacattttct 563
Query: 364 ccttggagtcaggatttttttcagcagctgtaatgttgaaaggacgcctataagaagaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccttggagtcaggatttttttcagcagctgtaatgttgaaaggacgcctataagaagaat 623
Query: 424 tctatgctcttgactcaagaggtagtttgttaatttattactaaagtggtaaagtgtata 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 tctatgctcttgactcaagaggtagtttgt-aatttattactaaagtggtaaagtgtata 682
Query: 484 aggaagttgttcaacttgactctaagaggaaaacacaaaataaaactttttataaatcaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aggaagttgttcaacttgactctaagaggaaaacacaaaataaaactttttataaatcaa 742
Query: 544 gccccactcataaagttgagattctgtacttgtcttctgtaataattataagggacatat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gccccactcataaagttgagattctgtacttgtcttctgtaataattataagggacatat 802
Query: 604 aaagctgataaatgtaaaaaacaaaaaaataaacctttgaaaagactttgaaaaattcta 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaagctgataaatgtaaaaaacaaaaaaataaacctttgaaaagactttgaaaaattcta 862
Query: 664 taatagactgttaacaatatatggaaagtcattgtaagtaaactataaaaacaagc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 taatagactgttaacaatatatggaaagtcattgtaagtaaactataaaaacaagc 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1118
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1108
Effective search space: 785572
Effective search space used: 785572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no491_f14.g1 MSMg01no491_f14.g1 CHROMAT_FILE:
MSMg01no491_f14.g1 PHD_FILE: MSMg01no491_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
(635 letters)
>mm_chr3_59927892_59928929
Length = 1038
Score = 1156 bits (598), Expect = 0.0
Identities = 627/642 (97%), Gaps = 11/642 (1%)
Strand = Plus / Minus
Query: 1 cattcattaaaataaagacaggcactgtgctgtgcgtaggcagagcgatgttttattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cattcattaaaataaagacaggcactgtgctgtgcgtaggcagagcgatgttttattttg 779
Query: 61 tgaaacactagtaattttccaacatctgaaggaagttaaaaaacaatcactacgatcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tgaaacactagtaattttccaacatctgaaggaagttaaaaaacaatcactacgatcatt 719
Query: 121 ttggtttctctgaagccaacagtatatgagtaatgctttggcactttatgggtcatccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttggtttctctgaagccaacagtatatgagtaatgctttggcactttatgggtcatccaa 659
Query: 181 aatcatcaaacagactttcaaaagtgctcgcagtagaaaccacacctc---ttttttttt 237
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 658 aatcatcaaacagactttcaaaagtgcttgcagtaggaaccacacctctttttttttttt 599
Query: 238 tttcctgggcatgg----attttccacgtaaaactggctttcagtgaggccagaattgta 293
|||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttcctgggcatggaaaaa----ccacgtaaaactggctttcagtgaggccagaattgta 543
Query: 294 agtaacagacacccagtttatttttagagactgggttaccattaatatatattcagagac 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtaacagacacccagtttatttttagagactgggttaccattaatatatattcagagac 483
Query: 354 ttttcagtctgagtgaaacacataaagtccttctcaattatttatacagaaaggtttcag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttttcagtctgagtgaaacacataaagtccttctcaattatttatacagaaaggtttcag 423
Query: 414 tctctactctatgtgctacagagcacataaaatatatacagcccaataataggagcatgc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctctactctatgtgctacagagcacataaaatatatacagcccaataataggagcatgc 363
Query: 474 ttaattaacatactgatagattcactttcaacacaattaatttgccctaagcagtactca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttaattaacatactgatagattcactttcaacacaattaatttgccctaagcagtactca 303
Query: 534 ctttatgaggttttaaattgtcagaaagaggcgtgcttggctccaacttcaacatgaggc 593
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 302 ctttatgaggttttaaattgtcagaaagaggcgtgctcggctccagcttcaacatgaggc 243
Query: 594 aatggaagatattctttttatgtttttcttttaaagcttgct 635
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatggaagatattctttttatgtttttcttttaaagcttgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1038
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1028
Effective search space: 642500
Effective search space used: 642500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
