BAC Information

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BAC

Clone NameMSMg01-491G10
Chromosome3 (Build37)
Map Location 101,862,641 - 101,998,392
singlet/doubletdoublet
Overlap geneCasq2, Vangl1
Upstream genePtgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047
Downstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491G10.T7 (MSMg01no491_g10.b1)MSMg01-491G10.TJ (MSMg01no491_g10.g1)
ACCAG569404AG569405
length760767
length of high quality
(start - end)
244 (64 - 307)242 (67 - 308)
definitionCHROMAT_FILE: MSMg01no491_g10.b1 PHD_FILE: MSMg01no491_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:18 2005CHROMAT_FILE: MSMg01no491_g10.g1 PHD_FILE: MSMg01no491_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,998,149 - 101,998,392)(101,862,641 - 101,862,879)
sequence
CCGCTATACGACNCACTATATTCAGACAATGCGCGGAATTCAGGGGGCAT
ACCTTGAATACACTCACAGTAAGTAGGTGCTGTGGAATGCATAGCCTGGG
CAAGAAGAGTGTCCATCAGTGAAGGAGCCCTCCACAGGCTTGAGAGCTGG
CGGTCTCAGGCATTTCTTGTCCCAGGAGGGCCCTGTGAAGGCTTCTCTGC
TTGATGATTTGTGGGGAGTTTAAATGGAGGAGTGGGAAAGAAAGGGAGTT
GGTCTTTTGGTGATTTGAGCACAGCTCCGACTCAGAAAGGAATAATAATG
TAGTGCCTGTATGTTTCTGATTGTCTTAGAGGGTTGGCCGCTTTCCAATC
CTGTTTGCTGACAAAGAGGTCACTGATGCCTGCGGTCCCCAGAGAGTGTC
CAGTTAGCTTTGTTGAGAGAGTGTAGAGACTACAGCCAATCTCGTCTGAC
CCGTAGTCAGCAGCAGCTGGAAGCAGTAAGCATCATCTCGGGAGTCTCCC
TCTCCCGTGCTCACAACAGTCCTAGCTTAGCCGGAGTTGGGATCTCCCGT
TTTATAAGTGATGACACTGATGCTCCGGGAGGAACAAGGTTCCCTGATTC
TGGCCAGGCATGAATACCCTCTGCAAGACTCATGTTTGTGGACCCTTTTT
ATTTAAAAGCCCACCTTTGATGGGAACGTGCATTATGAGCATTATTATGC
ATTGGATCTAAAGGGCTGTCCTGGACAGTTCGAAAATTTCCTATGATACC
TTTATCCATG
AGGCCTGGNGGNGNCCGGGCTCCCTACCTGCGGNGAACNANAGAAGGATT
TCAAACATACGGGTGATAATCTCTGAGTGAATGGTGGTTGGGATATTAGT
GAATATTAGGGTTCAGTGGGCCCCTCTGGGGGATTCCAGGCTCTTATGTC
CCCGAAGAACTGGATAGGGACACACGGATATTAGCAGGAGCAGGGGCTGC
TTATTAATAGATGGCACACTTGAGTCCAAGGAGGAAGATGTTTACCAGAA
CAAGGAGGTTAGTAGCACAAATGCAACGCTGTCCAAAGAATGGATCTCAT
ATGTCTTTCATCTATCTGNCTTTTGAGATTGTCTGCCAAACATGGGATTT
CTTGATCATGCTTTGTCTTCTACATGTAGTTCTACATACAGTTTCATGCA
TCACGTGTCTCATTATCACCTTAAATTTTCACCCGGGGGAATGTGCTTTG
ATTGTTATGAGTCACAGGTCATCTTCAGACACAGGCATGGCTGCTCTGGG
CCAACCTGTTCTACTTAGCCTGAGCAAGGAGGGACGGTGAGGCGTATAGA
CATGGAGGGGCAGGATGGGAGGAAAGTTCCTGCTTTTCTTCTTTTCCAAC
CAGCTTCTATTCCTTTGTCATATCCATGAGCTTTGTGCGATTGTTTTTTT
TTTCTTCTGTGACTTCTTCTACAGTATTCTCTTTGCTCTTGTGTCAACTC
CCTGAGAAATTCGTTATTCCCTTGGTCTCTGTCCCCCACGTGCCATCCAT
GTTTTCTTTTGCGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_g10.b1 MSMg01no491_g10.b1 CHROMAT_FILE:
MSMg01no491_g10.b1 PHD_FILE: MSMg01no491_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:18 2005
         (244 letters)



>mm_chr3_101997949_101998592
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagtaagtaggtgctgtggaatgcatagcctgggcaagaagagtgtccatcagtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacagtaagtaggtgctgtggaatgcatagcctgggcaagaagagtgtccatcagtgaa 385

                                                                       
Query: 61  ggagccctccacaggcttgagagctggcggtctcaggcatttcttgtcccaggagggccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagccctccacaggcttgagagctggcggtctcaggcatttcttgtcccaggagggccc 325

                                                                       
Query: 121 tgtgaaggcttctctgcttgatgatttgtggggagtttaaatggaggagtgggaaagaaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgaaggctactctgcttgatgatttgtggggagtttaaatggaggagtgggaaagaaa 265

                                                                       
Query: 181 gggagttggtcttttggtgatttgagcacagctccgactcagaaaggaataataatgtag 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggacttggtcttttggtgatttgagcacagctccgactcagaaaggaataataatgtag 205

               
Query: 241 tgcc 244
           ||||
Sbjct: 204 tgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no491_g10.g1 MSMg01no491_g10.g1 CHROMAT_FILE:
MSMg01no491_g10.g1 PHD_FILE: MSMg01no491_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:18 2005
         (242 letters)



>mm_chr3_101862441_101863082
          Length = 642

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatctctgagtgaatggtggttgggatattagtgaatattagggttcagtgggcccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatctctgagtgaatggtggttgggatattagtgaatattagggttcagtgggcccctc 260

                                                                       
Query: 61  tgggggattccaggctcttatgtccccgaagaactggatagggacacacggatattagca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgggggattccaggctcttatgtccccgaagaactggatagggacacacggacattagca 320

                                                                       
Query: 121 ggagcaggggctgcttattaatagatggcacacttgagtccaaggaggaagatgtttacc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 ggagcaggggctgcttattaatagatggcacacttgagtccaaggaggaagatgtggacc 380

                                                                      
Query: 181 agaacaaggaggttagtagcacaaatgcaacgctgtccaaagaatggatctcatatgtc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacaaggaggttagtagcacaaatgcaacgctgtccaaagaatggatctcatatgtc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)