Query= MSMg01no491_g23.b1 MSMg01no491_g23.b1 CHROMAT_FILE:
MSMg01no491_g23.b1 PHD_FILE: MSMg01no491_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:21 2005
(550 letters)
>mm_chr3_81917910_81918859
Length = 950
Score = 770 bits (398), Expect = 0.0
Identities = 493/550 (89%), Gaps = 44/550 (8%)
Strand = Plus / Minus
Query: 5 gaattcaaagccc-tttccaaaaagctctcctctcctctcc--tttttttttttc-acat 60
||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct: 529 gaattcaaagcccttttcaaaaaagctctcctctcctctcctttttttttttttcaacat 470
Query: 61 tgccttctgtgactagtggaaactcttttgagagatataaatagattaaggcaaaatgaa 120
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct: 469 tgccttctgtgactagtggaaactc-tatgagagatatgaatagattaaggcaaaatgaa 411
Query: 121 tttcccaacttggatcatatccagaaagttcttgacttttctgtgtgtaaagtgaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tttcccaacttggatcatatccagaaagttcttgacttttctgtgtgtaaagtgaaaaca 351
Query: 181 agactcgacgatcatgcacccatgcacagacatgtgtgactttcatccagaatcggaagc 240
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agagtcgacgatcatgtacccatgcacagacatgtgtgactttcatccagaatcggaagc 291
Query: 241 tgaacgcttctcatcaatgcctttccttgtttatcatcaattgcaaagaaagattcatta 300
||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 290 tgaacgcttctcatcgatgcctttccttgtttatca---agtgcaaagaaagattcatta 234
Query: 301 aaatagatcagtagatcgtcaaaagcacacgttaggtagagggaactgcaaatgtatgtc 360
|||||||||||||||| ||||||||||||
Sbjct: 233 aaatagatcagtagatagtcaaaagcaca------------------------------- 205
Query: 361 ttacaagaaaggaaatctcataaacactcagaaatcaaagagtgaaattaccaatatttg 420
||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 204 -----agaaaggaaatctcataaacactcagaaatcaaagagtggaagtaccaatatttg 150
Query: 421 gtaaggatgatattttaaaaatgggaattataataaaggcaaggccaagactcttgaaat 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 149 gtaaggatgattttttaaaaatgggaattataataaaggcaaggccaagactcttaaaat 90
Query: 481 acaccattctgatgacagattagttttgggggttaaaaagtgagcagtagagataactgc 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 acacctttctgatgacagattagttttgggggttaaaaagtgagcagtagagataactgc 30
Query: 541 aggttcttag 550
||||||||||
Sbjct: 29 aggttcttag 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_g23.g1 MSMg01no491_g23.g1 CHROMAT_FILE:
MSMg01no491_g23.g1 PHD_FILE: MSMg01no491_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:21 2005
(475 letters)
>mm_chr3_81776186_81777060
Length = 875
Score = 872 bits (451), Expect = 0.0
Identities = 469/475 (98%)
Strand = Plus / Plus
Query: 1 ctgcttcagctcaaggcccccttaagcctgaattctgtaagagcattttctctgaagaac 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ctgcttcagctcaaggcccccttaagccagaattctgtaagagcattttctctgaagaac 260
Query: 61 ataaggggagtttgttcctgagagtttacttttatcttccacggggccacgaaacaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaggggagtttgttcctgagagtttacttttatcttccacggggccacgaaacaatac 320
Query: 121 aactggtactgaaaattcctacaacccagcaaaggagaaagtacatggtgaaggccaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactggtactgaaaattcctacaacccagcaaaggagaaagtacatggtgaaggccaaaa 380
Query: 181 tatcagatgaatgaaaatatcctttgggataaggaactgaatgtgcttcagtgtcagtta 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tatcagatgaatgaaaatatcctttgggataaggaaccgaatgtgcttcagtgtcagtta 440
Query: 241 tctaagccctctgtacagtgaccaaaatgtaatctttctgtaagtgcgagcttgtttcac 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tctaagccctctgtacagtgaccaaagtgtaatctttctgtaagtgcgagcttgtttcac 500
Query: 301 actatgaagatttatagtaagaacatgacagacatgggaagacagtttgattcactgtgt 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatgaagatttacagtaagaacatgacagacatgggaagacagtttgattcactgtgt 560
Query: 361 ttccagactgctcatggaaaatgaaatgaatcttttccactcgtttgtccttcactgaag 420
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ttccagactgctcatggaaagtgaaatgattcttttccactcgtttgtccttcactgaag 620
Query: 421 tgtataaaccccacaaaagaagaaatttcatctcagttgcctaggttttccttca 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtataaaccccacaaaagaagaaatttcatctcagttgcctaggttttccttca 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
