BAC Information

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BAC

Clone NameMSMg01-491L08
Chromosome3 (Build37)
Map Location 37,513,314 - 37,513,565
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778
Downstream geneSpry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L08.T7 (MSMg01no491_l08.b1)MSMg01-491L08.TJ (MSMg01no491_l08.g1)
ACCAG569639AG569640
length731752
length of high quality
(start - end)
538 (64 - 601)252 (62 - 313)
definitionCHROMAT_FILE: MSMg01no491_l08.b1 PHD_FILE: MSMg01no491_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:42 2005CHROMAT_FILE: MSMg01no491_l08.g1 PHD_FILE: MSMg01no491_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
GTTAGTTCTCGTGTTAGTTTTTTGAAGCCTGGATACTGATTTCCAAAGTG
GCCCACACTATACCTGGACATTCCCACCAGCAGGCTTTAAGTGCCATTGT
TGGCCTTTGTCCTCTCCAGGATTTGTGGTTTTCTTGATGGCTGCTATTCT
GACTGGTGTGAAGTGGAGCCTCAGTTTAGTTTTGATTTGCATTTCCCTCC
TTGTTAAGGATATTTAATATTATTTTTCTGTACTTACTGCCTTCTTGAAA
ACTGTCTGTTCCATTCATATTGACCAGATATTGACTGACTGGGGGGACAA
GTTTTCTTTTTAATTCTTTACCTTTATGAATTTTACTCCTCTCTGATTTA
TACTTGGCAAAGATTTTCTCTCAATCTGTAGCCTGCCCCATCAGATGATT
ATTTTTTATGTAGAAGCTTTTTAATTTTATTTAATTCTATTTGCTTACTT
TTTATTGTTACTACCTAAGTTGTTTCTATCCTTTCACAAAGTAATTGCAT
ATTATGTCTCAAACAATGCCTTCCCCATTCTTGTAGTTTCTAAGTGTCAG
GTCTTTAGTCTTGATTTCATTTTTTTATTTAATTTTTTTAGATTGTAGTA
TAACTACATCATTCCTCCCCTTTTCTTCCAAACTCTCCTATATACCCATT
GTTACAATATTTTGTTAAGTTTTGTTGTTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTTCCAATTCTTGGGTGGAACTGGTCATCAGAAGAGATGGCCAACAGGT
CAGATGGACACAGGTTCAGGGAGGGTGGCGAGCTCATAGTCATGTCTCAG
GCAGCGTGCAGGCTGGGCATGTCGTAATTCCTGATCACAGGCTGGATTAA
AAGGAAGAGCGCTGGAGGTTGCTGAAGTAGCCGTGCACCGGGTGGTGGAG
GCCTGACATGCCAGAGGAAATGAGAAGAGGGCGGGCATCTGGGAGCTGAG
CAGGGAATTGACCTTTTTTGTGGTTTGGATCTAGAAGGGAATTATGGGAA
GCTAGAACTACCAGCTGGTGAAGATAGTGTTAACGTTTTTAACTTAGAAT
TTAAATTTCCACAACAATTTTCTGAGTTTAAAATGGGGCTCGTTTGGCCA
GAGCATAAGGAATATTTGCACCTGGTAAGTTCGAGTTCCGTGGTGAGTTC
TGTAGGAACAGCGATCCTCCCAGGAGATGCATACGACCTGAGAGCAGTTA
TCAGTGATCAGGACAATTGATCTGTGCCTGTCTGCTGAACAGATGGTTGA
AAATCAGGGTAAGAATCCCGAAGCATATTGCAATGATAAGGACAGAAATC
TGTAAACTATGCTTTAAGATTTGGGGAAAAGTGTCAACGGTGTTTTTCTA
TATCTGCGACACAATGCCTAAAGGATTTGTCCTGACTCTCACTCTGAAGG
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l08.g1 MSMg01no491_l08.g1 CHROMAT_FILE:
MSMg01no491_l08.g1 PHD_FILE: MSMg01no491_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:42 2005
         (252 letters)



>mm_chr3_37513114_37513765
          Length = 652

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggtggaactggtcatcagaagagatggccaacaggtcagatggacacaggttcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttgggtggaactggtcatcagaagagatggccaacaggtcagatggacacaggttcaggg 393

                                                                       
Query: 61  agggtggcgagctcatagtcatgtctcaggcagcgtgcaggctgggcatgtcgtaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agggtggcgagctcatagtcatgtctcaggcagcgtgcaggctgggcatgtcgtaattcc 333

                                                                       
Query: 121 tgatcacaggctggattaaaaggaagagcgctggaggttgctgaagtagccgtgcaccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgatcacaggctggattaaaaggaagagcgctggaggttgctgaagtagccgtgcaccgg 273

                                                                       
Query: 181 gtggtggaggcctgacatgccagaggaaatgagaagagggcgggcatctgggagctgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtggtggaggcctgacatgccagaggaaatgagaagagggcgggcatctgggagctgagc 213

                       
Query: 241 agggaattgacc 252
           ||||||||||||
Sbjct: 212 agggaattgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)