XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCAAAAT
CAATTATGCAATGAATGACCCAAGGTGCTTCTGAGAATGCTTACCAAGGG
TGCATGCACAACTGCACAGTAGCCTTGGTTTTCAGTGTACAACATGCGCA
CTTGCACTGTGCGTGTCATTACACCACGTGCCACATGCCAGCAAACACTG
CTTCAAACACTTCAGCTCAGGTTCAAGACTCTGGTATGTTTTTCTTAAAA
AGTTTTCTTTTCCTCGGTAAACGTGATGGTTTAATGTTGGAAGCAGACTT
CCAGTATTTTTCTACCATTATCTCCTCAGCCCACAGCTATCAAATTCCTA
TGTCTTCGGCTAGCATTGGGTTGTGATGCTTGGTTTTAGAAATTGAGATT
TCAAAGTCGAACAAGTTTCATAAAAAACAGGAACACATTCTAACTTGGTA
TTTAGACAGAATTTCTACAGTGCCCAAAATACCCCTACATGTTCTTCTGT
CTTTTTGCACTATATGTTTATGTGAAGTGATGTCTCAGCACTGATGATTA
TAAATTTAAAGTAATGATCAATTTACTCATAGAGTAATTAAAGATGTTTT
ATGTCCAGAAGTATTAAATATTCATGAAAAACAATTCTTTCTGTAAAAAT
AAATATGGACATCTATCTCATATGCCAATATGCTAATTATATACTATAAT
GTCAATAAATGGGATACATACACACACACACACACNTACACACACACA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATTGCTAGTGTGTCCCTTGATGTAGAAACAGGAG
TAAAATAGAATAAAACATTTTGACATACTCAAGACCACTTTGTAACACCA
ACAGCTCTTAGCAGGGGCTCATCACATTCCCTGCTGTAGCTGTGCTTAGC
CCAGGAGACTGAGCAGGTAGGTCTCAGAGACACCATGTCATAAAGTGCTC
CAAGCACTCTGGGTGATGTTATTTGGGAGAGGGAAATGCATGTTTGTGGA
TGTTTAAAAGTTCTACTGTAAATATTTGCATAAGGGAGTCTTGCAAGAGC
AGTAGGACTCCATCAGACTTTGTAGGTATTAAACAATGAAGAGTGCATCT
AGGAGGCCAGCTTCTAAAGGCTGGGCACATGAAAACACATAGGAGTTGTG
TCTCTGCTGACTTGACATTGGGATTCAGAATTTTAATTTATCTATTAAAA
ATAAGAGTAAATACAAAATGGAAGTTTTTAATTAGCAGACCTACACACAA
CTATCAATTAAATAAATATTAAATTGCCCAATATTTTAATGAATCTCATA
GTTCATCTAATATAGTGCCTTGATTCTGTATAAGATAAAGTTTTCTAAAA
AAAATCAGAGAGGGCCTGAAGAGATGGCATGGGTACTAAGAACACTGGCT
GCTCTTGAAGCCCAGGTTAGATTCCACAAACCCATATGA

Query= MSMg01no491_n01.g1 MSMg01no491_n01.g1 CHROMAT_FILE:
MSMg01no491_n01.g1 PHD_FILE: MSMg01no491_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:50 2005
         (553 letters)



>mm_chr3_66008228_66009182
          Length = 955

 Score = 1000 bits (517), Expect = 0.0
 Identities = 545/555 (98%), Gaps = 2/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgctagtgtgtcccttgatgtagaaacaggagtaaaatag--aataaaacattttga 58
           ||||||||||||||||||||||||||||| |||||||||||||  || ||||||||||||
Sbjct: 755 tattgctagtgtgtcccttgatgtagaaataggagtaaaatagaaaaaaaaacattttga 696

                                                                       
Query: 59  catactcaagaccactttgtaacaccaacagctcttagcaggggctcatcacattccctg 118
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 695 catactcaagaccactttgtaacaccaacaactcttagcaggggctcatcacattccctg 636

                                                                       
Query: 119 ctgtagctgtgcttagcccaggagactgagcaggtaggtctcagagacaccatgtcataa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctgtagctgtgcttagcccaggagactgagcaggtaggtctcagagacaccatgtcataa 576

                                                                       
Query: 179 agtgctccaagcactctgggtgatgttatttgggagagggaaatgcatgtttgtggatgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agtgctccaagcactctgggtgatgttatttgggagagggaaatgcatgtttgtggatgt 516

                                                                       
Query: 239 ttaaaagttctactgtaaatatttgcataagggagtcttgcaagagcagtaggactccat 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 515 ttaaaagttctactgtaaatatttgcataagggagtcttgcaagagcagtagaactccat 456

                                                                       
Query: 299 cagactttgtaggtattaaacaatgaagagtgcatctaggaggccagcttctaaaggctg 358
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 455 cagactttgtaggtattgaacaatgaagagtgcatctaggagaccagcttctaaaggctg 396

                                                                       
Query: 359 ggcacatgaaaacacataggagttgtgtctctgctgacttgacattgggattcagaattt 418
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggcacatgaaaacacataggaattgtgtctctgctgacttgacattgggattcagaattt 336

                                                                       
Query: 419 taatttatctattaaaaataagagtaaatacaaaatggaagtttttaattagcagaccta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taatttatctattaaaaataagagtaaatacaaaatggaagtttttaattagcagaccta 276

                                                                       
Query: 479 cacacaactatcaattaaataaatattaaattgcccaatattttaatgaatctcatagtt 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 275 cacacaactatcaattaaataaatattaaattgcccaatattttaatgaatcccatagtt 216

                          
Query: 539 catctaatatagtgc 553
           |||||||||||||||
Sbjct: 215 catctaatatagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space:   513135
Effective search space used:   513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)