Query= MSMg01no491_p05.b1 MSMg01no491_p05.b1 CHROMAT_FILE:
MSMg01no491_p05.b1 PHD_FILE: MSMg01no491_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:01 2005
(249 letters)
>mm_chr3_28517802_28518450
Length = 649
Score = 379 bits (196), Expect = e-110
Identities = 233/250 (93%), Gaps = 10/250 (4%)
Strand = Plus / Minus
Query: 1 ctctgtgaacaaacatatgtatgcaaatatatagaggtacttttcactgtagtctatgtg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 590 ctctgtgaacaaacatatgtatgcaaatatataaaggtacttttcactgtagtctatgtg 531
Query: 61 atcacctttctctttgaaattttgcttgtccacaagtgtgtgtgtgtgtgtgtgtgtgtg 120
|||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 530 atcatctttctctttgaaattttgcttgtccacaagtatatatgtgtgtgtgtgtgtgtg 471
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtatgcagaagcaggtgtcagactccctgaagctggatt 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 470 tgtgtgtgtgtgtgtgtgtgtg--tgcagaagcaggtgtcagactccctgaagctgga-- 415
Query: 181 ttttt----gtggttctgggttcagtgtagattcaacatccacctcatgttgacctttat 236
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 414 --gttgcaggtggttctgggttcagtgtagattcaacatctacctcatgttgacctttat 357
Query: 237 tgaccacaaa 246
||||||||||
Sbjct: 356 tgaccacaaa 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no491_p05.g1 MSMg01no491_p05.g1 CHROMAT_FILE:
MSMg01no491_p05.g1 PHD_FILE: MSMg01no491_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:02 2005
(577 letters)
>mm_chr3_28349999_28350975
Length = 977
Score = 1031 bits (533), Expect = 0.0
Identities = 567/579 (97%), Gaps = 2/579 (0%)
Strand = Plus / Plus
Query: 1 agtaattaaattcaaccaatgttttttgagtgcctgttgtatgcgcaatgtgttagggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agtaattaaattcaaccaatgttttttgagtgcctgttgtatgcgcaatgtgttagggca 258
Query: 61 taaaagggagattttgaagcttataatcaaatattggagctaaagcaagtgcttaacact 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 taaaagggagattttgaagcttataatcaaatattggagctaaagcaagtacttaacact 318
Query: 121 caagggtaattctgagaaagaagcttaattgaaatttatttaattaattaaaattaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caagggtaattctgagaaagaagcttaattgaaatttatttaattaattaaaattaaatt 378
Query: 181 tgcatgtaacagatctgagctgtagcatcctacatgtcaattatctttttcattttgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcatgtaacagatctgagctgtagcatcctacatgtcaattatctttttcattttgatc 438
Query: 241 caacttaaataattatgtacagtgggctgtaacaaatggattgggaaatatcaatgcata 300
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 caacttaaataattacgtacagtgggctgtaacaaatggattggggaatatcaatgcata 498
Query: 301 tggatatgatgaagaaatggtcatttctttttaagaacttgtgtgtgtgtgtgtgtgtgt 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggatatgatcaagaaatggtcatttctttttaagaacttgtgtgtgtgtgtgtgtgtgt 558
Query: 361 gtgtgcgcgcgcgc--gcgtgcacgcgcaatgaaagtcaaatactttaataaaaatggct 418
||||| | | | || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 gtgtgtgtgtgtgcacgcgtgcacgcgcaatgtaagtcaaatactttaataaaaatggct 618
Query: 419 tttttgtaatgagtgctttgagactctatagaaagtagagcttaatcttcaaagaaaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttttgtaatgagtgctttgagactctatagaaagtagagcttaatcttcaaagaaaaaa 678
Query: 479 atttttaagaaagaaatggcatttaggtttggtctttaacaagaaatagtatgttgatag 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acttttaagaaagaaatggcatttaggtttggtctttaacaagaaatagtatgttgatag 738
Query: 539 gtgggcatgagcaatctagggtaaagactgggcttgaaa 577
|||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gtgggcatgagcaatctagggtaaagactgggcttgaaa 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
