BAC Information

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BAC

Clone NameMSMg01-491P07
Chromosome3 (Build37)
Map Location 56,532,240 - 56,532,493
singlet/doubletsinglet
Overlap genenone
Upstream geneMab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491P07.T7 (MSMg01no491_p07.b1)MSMg01-491P07.TJ (MSMg01no491_p07.g1)
ACCAG569829AG569830
length727721
length of high quality
(start - end)
249 (64 - 312)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no491_p07.b1 PHD_FILE: MSMg01no491_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:02 2005CHROMAT_FILE: MSMg01no491_p07.g1 PHD_FILE: MSMg01no491_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CACTATTTTCTAAGTGTACCCATCCTGACTGTCAACTGACTAGCAACAAT
CTTTCCTTGCTCTTCCCTATTTTGTGAGGTGAAATCCTAGGGTCTTCATG
GACAGAAAACCTTCTCCATTCCCATATCTGACTACCAACAGACTGGCAAC
AACAATCTTTCCTTGCTCTTCCCTCTTTTTATGGGGTGGAATCCTAGGGT
CTTCATGGACAGAAAATCCTTCTCCATACCTGTCTTAATTAGGGTTTCTA
TTCCTGCACAAACATCTTGACCAAGAAGCAAGTTGGGGAGAAAAAGGGCT
TATTTGGCTTACACTTCCATATTGCTGTTCATCACCAAGGAAGTCAGGAC
TGGAACTTAAGCAGGTCATGAAGCAAAAGCTGATGCAGAGGCCATGGAGG
TATGTTCCTTACTGGCTTGCTTCTCCTGGCTTGCTCAGCCTGCTCTCTTA
TAGAACCCAAGACTACCAGGCCAGAGATGGTCCCACCCACAATGGGCCTT
TCCCCCTTGATCTCTAATTGAGGAAATGCTTTACAGTTGGATCTCATGGA
GACATTTCCTCCACTGAAGCACCTTTCTCTGTGATAACTCCAGCTTTTGT
AAGCTGACTACAAACTAACCCAGTACAATACCCATCTCTCCATTTTCCCT
TGATGACTCATCTCCATTATTTCAGAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAATGATTGAGAAGC
ACTTGAAAAAATGATCAGCATTCTTAATCATCAGGGAAATGAAAATCAAA
ACATCCCTGAAATTCCACCTCACATCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACTGCAGATTTGGCGAGGATGTGACCTGTCCAGCAGGTCAAG
TTATTCATGGGTCTCAACGGGACTCCTCCTAAAACCAAATGGGGGGTGAG
AGACAAAGGAGACCTTTTTCAGAAACGACATGGAGCCAAATCTAAATCTT
GTCAAGGTCTCATTGTGTTCAGTAAAACTTAGTTTTTATACACAAAGATC
AAAGGGGAAATAACCCTTATGCAGAAGGGCAGGGGAGGGGGCAGTGGTAA
TTTTCCTTGGTGACTACAAGGGGAGTCATGGTATATAAAAGTTCATCTTA
TGGTTATGACGTCTGCTGTTTGCATCAGTCAGGTCTGGTGTCATCTTGTG
GTAATTGTTGGTGACCTTCATCTGGACTTAGTCAGCTTGGGGAGGGCGTC
CATCTGGAAACAGTCCATTGGTGACCTTTGTCTGGACTTANTCACTTTGG
GGAGTAGGTCCTATTTTATGTCCTAAGACTTGGTAGTTCACTTGGATTAT
TATAAAGAATTTATTTTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_p07.b1 MSMg01no491_p07.b1 CHROMAT_FILE:
MSMg01no491_p07.b1 PHD_FILE: MSMg01no491_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:02 2005
         (249 letters)



>mm_chr3_56531904_56532552
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtacccatcctgactgtcaactgactagcaacaatctttccttgctcttccctatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtacccatcctgactgtcaactgactagcaacaatctttccttgctcttccctatttt 260

                                                                       
Query: 61  gtgaggtgaaatcctagggtcttcatggacagaaaaccttctccattcccatatctgact 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gtgaggtgaaatcctagggtcttcatggacagaaaaccttctccactcccatatctgact 320

                                                                       
Query: 121 accaacagactggcaacaacaatctttccttgctcttccctctttttatggggtggaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaacagactggcaacaacaatctttccttgctcttccctctttttatggggtggaatc 380

                                                                       
Query: 181 ctagggtcttcatggacagaaaatccttctccatacctgtcttaattagggtttctattc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ctagggtcttcatggacagaaaatccttctccatacctgtcttagttagggtttctattc 440

                    
Query: 241 ctgcacaaa 249
           |||||||||
Sbjct: 441 ctgcacaaa 449



 Score =  217 bits (112), Expect = 6e-61
 Identities = 206/258 (79%), Gaps = 43/258 (16%)
 Strand = Plus / Plus

                                                                       
Query: 31  caacaatctttccttgctcttccctattttg-tgaggtgaaatcctagggtcttcatgga 89
           ||||||||||||||||||||||||| ||||  || |||| ||||||||||||||||||||
Sbjct: 337 caacaatctttccttgctcttccctctttttatggggtggaatcctagggtcttcatgga 396

                                                                       
Query: 90  cagaaaa-ccttctccattcc---cata---------tctga---ct--accaaca---- 127
           ||||||| |||||||||| ||   | ||         ||| |   ||  || ||||    
Sbjct: 397 cagaaaatccttctccatacctgtcttagttagggtttct-attcctgcacaaacatcat 455

                                                                       
Query: 128 gactggcaacaa-caa-t--------------ctttccttgctcttccctctttttatgg 171
           |||   ||| || ||| |              ||||||||||||||||||||||||||||
Sbjct: 456 gac---caagaagcaagttggggagaaaaggactttccttgctcttccctctttttatgg 512

                                                                       
Query: 172 ggtggaatcctagggtcttcatggacagaaaatccttctccatacctgtcttaattaggg 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 513 ggtggaatcctagggtcttcatggacagaaaatccttctccatacctgtcttagttaggg 572

                             
Query: 232 tttctattcctgcacaaa 249
           ||||||||||||||||||
Sbjct: 573 tttctattcctgcacaaa 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)