BAC Information

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BAC

Clone NameMSMg01-492C01
Chromosome3 (Build37)
Map Location 131,501,366 - 131,501,757
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C01.T7 (MSMg01no492_c01.b1)MSMg01-492C01.TJ (MSMg01no492_c01.g1)
ACCAG569958AG569959
length730774
length of high quality
(start - end)
687 (44 - 730)172 (210 - 381)
definitionCHROMAT_FILE: MSMg01no492_c01.b1 PHD_FILE: MSMg01no492_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:16 2005CHROMAT_FILE: MSMg01no492_c01.g1 PHD_FILE: MSMg01no492_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCAACCTTTTGACCAAAACCCAAATCACCTGTTGGATATTTGATA
GAAAATGTGAAGATTTGAATACAGACTTAACCGGTGGTAGACAGTACACA
ACTTATGTAAATCTATTGGCCAGTTGTAGAAGCACAATAAAGCCAAAGAG
AGATACTATGGTCATATAGCCATGTTACTCCAAGCCCTCAGTTCCTGCCT
TCACCTTCCTGCCTTGGGTTCCTGTCCTGGCTTCCTGTCATGAAGGACTC
GATTAGGACGTGTACACTAAAAAGCCCTTTCCTACCTAAGTGTATTTTGG
TCACAGTGTTTAAGTACAGCAATAGAAATCCTAAGGCAAGGACTTACCTA
ACACATGTTGACAATACGATATAAAAAATGAACTCTACACAATGGTAGTG
TATGAAAAGTAGTTCATTTGCTTTAGAGAAGAGTTTATAGGGAACTGGAG
AGCTAGCTCAGCAGTCAAGAATGAATACTTCTCACACAGAGGATCTAAGT
TAAGTTCCCAGCATTCATGTCAAGCAGCTCACAACCACCTGTAAATCTGT
CTTTAGAGGCTCTGATATCTTCTTCCAGACTCCATAGGTGCCTGAACATT
TGCATGATACACACACACACACACACACACACACACACACACACACACAC
ACACATACACATGCACACACAGCATAGACA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGGCCTGAGCCATGACAATAAACATTTC
TCAGGGTAGGCTTATAAAAGAAGAAAAAAATGAAATGAGCTCATGTGCAG
GTGCAGGAAGTGCTGCCCTATGGTCATCTCTGAGTCAAGCCATTTTAGAC
ATAGCAGTTCATATTGACCTTTAATTTGATGGGTTCTATGTAAAGCTTTG
TGGAATTTCTCAAGATAAACAAATCTCGGGACACATAGAACATAACGGAA
TATGTGATCAGCATAGATGTACCTTGTTCTGAGCCAAGTGTGTGTGTTTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTTTTCCCTCTTCTT
GCNTTCCGTCTTCTTTCTCGTCTTTCGCGTTTCCGCGTAGTTTTTCTAGC
CCTGTCTCTCTGTCTTGCTTCGTTCCGTTTTTTCGTTCCTCGTCGCTCTA
TCCCCCTTTTTCGTTTTCTTTTCGTCTTTTTCGTTTCGCCTTTTTTTGTT
CTCCTTTCTTCTTTCCCTCTTCTCTCTTATTTTTCTGTCTTTTTCCTTTC
CCTCTTTATCCCGCCCTCTCTTCTTTCTTTTCTCTCCTTTTGGTCTTTCT
CCTTTCTGCGCCGCTTCCTTTTCCTCTTCCCTTCTTCCTTTCGTTACTCC
CCGTCTCCTTTCTTCTTTTTTCCTTCTTCTATCCTTCGTTGTTTTTTCGT
TCCTTTCGCCTCCCCTTTGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c01.b1 MSMg01no492_c01.b1 CHROMAT_FILE:
MSMg01no492_c01.b1 PHD_FILE: MSMg01no492_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:16 2005
         (687 letters)



>mm_chr3_131501366_131502452
          Length = 1087

 Score =  700 bits (362), Expect = 0.0
 Identities = 386/396 (97%), Gaps = 4/396 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcaaccttttgaccaaaacccaaatcacctgttggatatttgatagaaaat 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggaattctttcaaccaaatgaccaaaacccaaatcacctgttggatatttgatagaaaat 333

                                                                       
Query: 64  gtgaagatttgaatacagacttaaccggtggtagacagtacacaacttatgtaaatctat 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 332 gtgaagatttgaatacagacttaaccggtggtagacagtacacaacttatgtaaatatat 273

                                                                       
Query: 124 tggccagttgtagaagcacaataaagccaaagagagatactatggtcatatagccatgtt 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 tggccagttgtagaagcacaataaagccacagagagatactatggtcatatagccatgtt 213

                                                                       
Query: 184 actccaagccctcagttcctgccttcaccttcctgccttgggttcctgtcctggcttcct 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 212 actccaagccctcagttcctgccttcaccttcctgccttgggttcttgtcctggcttcct 153

                                                                       
Query: 244 gtcatgaaggactcgattaggacgtgtacactaaaaagccctttcctacctaagtgtatt 303
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 152 gtcatgaaggactcgattaggacgtgtacactaaaaagcccttt----cctaagtgtatt 97

                                                                       
Query: 304 ttggtcacagtgtttaagtacagcaatagaaatcctaaggcaaggacttacctaacacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ttggtcacagtgtttaagtacagcaatagaaatcctaaggcaaggacttacctaacacat 37

                                               
Query: 364 gttgacaatacgatataaaaaatgaactctacacaa 399
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gttgacaatacgatataaaaaatgaactctacacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)