BAC Information

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BAC

Clone NameMSMg01-492E08
Chromosome3 (Build37)
Map Location 10,243,411 - 10,243,544
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb10, Zfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4
Downstream gene1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492E08.T7 (MSMg01no492_e08.b1)MSMg01-492E08.TJ (MSMg01no492_e08.g1)
ACCAG570067AG570068
length703819
length of high quality
(start - end)
236 (76 - 311)136 (76 - 211)
definitionCHROMAT_FILE: MSMg01no492_e08.b1 PHD_FILE: MSMg01no492_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:27 2005CHROMAT_FILE: MSMg01no492_e08.g1 PHD_FILE: MSMg01no492_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGAGGATGGGCGG
AATTCCAGGTCTGCCAAGGCAACTCAGAAGGTAAAGAAGAGCTGAGCCTG
ACTCCTGGGACTCACGGGGAAGGAGAGAATGAGATCCTATGGGCTGTCCT
CTGACCTCCACACGTGAGATGGGGGTGTGCCGATGCACCTTCTATAAAAA
TATTCAGGAAAAACTAAAGCTTCCCACTCTTGAGAGCAAAGTACCTTCAT
TTTATAAGAGGAAGATCAGAAGACATAATGAGCCATGTGGTTGCCCAATG
GCACACGGAGGGCTTTTTGTGGAGTCTGCACAGCATCTCATGCTCTGCAC
AGATTTCAAGAAAAGCCTTCATGTAGAAAGGTTTCTTCTGTCTGGTTATG
GAAGCTTGCTTACTAGGCATTTGGGGTCTAAGAACTCGATTTTAGTGTGT
TTGTTTGTTGATGGGGTAGCTCCAGAGTCCTGAGAGAGGCTTTGCGTCTG
CATTGAGCCAGTTCAATTCTCAGACGGCCCTCAATGTTTGGAGTGGATTA
GCGAGTCTCCCAGGTCTTGTCTGTCTACATCAGTGAAGAAGATCCACAGT
CTGAGTATTCTTGACATAGACCGGAAACCGTTCTGGTAAACTTCTAAACT
TGGGCCCAACTACCGAGAACTAATAAATTCCTTTCCCATGGGTTATTATA
ACC
TGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCTCGAAATGGGTTAATGAACAGAGTAGAGAACTGAGG
TGTCCCAGAGAGAGAGGTGCCAGGATTCCTTTTGTATTGTGAGATCTTCT
CTTAGCAAACGCTATCAGCCATTTCACATCCTTATGGACAAAAGCAAAGA
AAGATAGAACCCGTTTTCCAGACCTTTTAAAGCCAGAATTGGCTTATTAT
TATTACTTACCGCTATATACACTATTAGTACTATTATGATTATTATTGGT
TATAAGCGTGACTTTTTTTTTTTGANGAGGCCTCAAAATGCTAAAACTCC
CACGTTTCCTTTTTTCTTGCATTGGGAGAACCCATTCGTGCTTTCGCCCG
CCTCCTTGGTCCTCTATCCAACCCGTGCTGGGTATAGCACACCCCGCCAT
GGGGGGTGCGCNNNNCNCCCCCTCTCTGGGGGGGAAGGGCGGCGGGGAAA
AAAAAAGAGCTCTGGGGGTTTTTGTCCCGGTGTTCTTTTTCTTTCGGGGG
CCCCCTTTTCTTTTTCTCTTCCTTTCAATTGTTTTGCTCTCCCGCTTCGC
CTTTACTTCGTTTTGTGCCCGCCCCTCTTCCGCCGTTTGTTGCGGGGCGC
TATCCCTTGCGTTCTTTTAATGCTTTTGCCCTTTGTCTTCTTCCGTTTTC
GCTGTTTTACCTCGCCCTATTCTCTCCTTTTTTTCTCCCCTGCGTTCCTC
TTATCCACACTTTCTCTTTTCCCCCTCTCTTTCGCCCTATATCCCCTTTC
CGCGCTTTGCTCTGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_e08.g1 MSMg01no492_e08.g1 CHROMAT_FILE:
MSMg01no492_e08.g1 PHD_FILE: MSMg01no492_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:27 2005
         (136 letters)



>mm_chr3_10243211_10243744
          Length = 534

 Score =  236 bits (122), Expect = 4e-67
 Identities = 132/136 (97%), Gaps = 2/136 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgaacagagtagagaactgaggtgtcccagagagagaggtgccaggattccttttgt 60
           |||| ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||
Sbjct: 334 taatcaacagagtagagaactgaggtgtccc--agagagaggtgccaggtttccttttgt 277

                                                                       
Query: 61  attgtgagatcttctcttagcaaacgctatcagccatttcacatccttatggacaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attgtgagatcttctcttagcaaacgctatcagccatttcacatccttatggacaaaagc 217

                           
Query: 121 aaagaaagatagaacc 136
           ||||||||||||||||
Sbjct: 216 aaagaaagatagaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 534
Length adjustment: 8
Effective length of query: 128
Effective length of database: 526
Effective search space:    67328
Effective search space used:    67328
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)