BAC Information

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BAC

Clone NameMSMg01-492P14
Chromosome3 (Build37)
Map Location 29,002,313 - 29,002,836
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492P14.T7 (MSMg01no492_p14.b1)MSMg01-492P14.TJ (MSMg01no492_p14.g1)
ACCAG570603AG570604
length715720
length of high quality
(start - end)
344 (318 - 661)524 (75 - 598)
definitionCHROMAT_FILE: MSMg01no492_p14.b1 PHD_FILE: MSMg01no492_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:21 2005CHROMAT_FILE: MSMg01no492_p14.g1 PHD_FILE: MSMg01no492_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGTTCAGAACACGGCNGGAAT
CANGGAGGTTCTGAAATAATGAACCAATAAATGTAATCCACCATGCTAAA
TGATAGAAAACTCAGGATCATGTCATTAGATACAGAAAAGTTCTTTAACA
AAAATCTACCGTCTATTATGATAAAGCTTTTGAAGAGAATTTGGATACAG
GGGACATATTTCAACATAACCCAGGCAATATACAATATACAAGGTACCCA
CATCTAGCCTTATCCTAAATGGAGAAAAACACGAAGTATGCTTCTAAAAT
CAGGAGCATGACTAGGTTGTCCAAGATTGGTGGCCCCACTCCTGTTTAAC
ATATTTCCTAAAGTCTTAGCTAGACCAAGAAGATAAGTAAACAAGATAAA
CAGGATAAAATAGAAAGAGAAAATCTCCAAGTATCCCTATTTTCAGATGA
TATGATTCATACATAAGAGACCATAAAAATATACAAAGGTATTCCTAGAG
CTGATAAACACATTCAGCAGAATACAAAATTAACACATAAAATTAATCAG
TATTGACAGAATGAACACTATATATATATAACACTATATACATATATATA
TAAAACACTATATATTTATATATATATATATAAAGAGGCCATAAATTTGA
AATTTTGAAAATTGAAAATTTGAAAAACAGCAAGGAAATATATATGGAGG
GTTGGTGGGAGGAAG
GCAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXGCGCTGACAGGTAAGAATTGGGAGCCAGGAAT
AAACTCTGTCTTCATTCTCTGACTTTCATAAATCTATTTACAGGAGAGGC
CCCATTAACATTTTAATTGTTTCACTGCTAAACTTGCTCTAACTGCCACC
TTTAAAGTGCTCAGGTTCATTAAAATTTAAGGGACCAGAAAGTTTATGTT
CTATTCTAATGACCCAGAGGTGGTTACAAAGGCTCTCAATACTTTTTCTT
TGCTTCATTGTTTTCTTGGGGGATTCTATCTAGTAGCTAGGCATGTTCAA
AAGTGGGGTGAGATGTTGCATCATTTCAGTCTCACTAGAGTGCTCTCTGT
ATGTCTCTCTTTTCTCTCATTTGAGTACCAAGGTTTCTTAAGGTACATTT
ATTCCATGGCCTATATTCCTTGCTCCCCCTCCCCTCTACTCCCCTCTCCA
ACCTTTCTTCTCTCCTCTCCTGCCCTCCCCTCTCCTCACCTCTTCTCCCC
CTGCTTCCTTTATGTGCATGTTACATATGCACATAGAGACCATAGTTCAA
CCCTGAGGACTGTTCTTCAATGTCTGTCCAGCTTAGTTGCTGAAGCATGC
TCCCTCCTTGATCTATGCCTCATTGACGGTGCTAGGCTGACTGTCCAGAG
TCCTGAGGATAATTTGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_p14.g1 MSMg01no492_p14.g1 CHROMAT_FILE:
MSMg01no492_p14.g1 PHD_FILE: MSMg01no492_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:21 2005
         (524 letters)



>mm_chr3_29002113_29003036
          Length = 924

 Score =  920 bits (476), Expect = 0.0
 Identities = 512/528 (96%), Gaps = 8/528 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggtaagaattgggagccaggaataaactctgtcttcattctctgactttcataaatc 60
           |||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||
Sbjct: 201 acagttaagaattgggagccaggaataaactccgtcagcattctctgactttcataaatc 260

                                                                       
Query: 61  tatttacaggagaggccccattaacattttaattgtttcactgctaaacttgctctaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttacaggagaggccccattaacattttaattgtttcactgctaaacttgctctaact 320

                                                                       
Query: 121 gccacctttaaagtgctcaggttcattaaaatttaagggaccagaaagtttatgttctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacctttaaagtgctcaggttcattaaaatttaagggaccagaaagtttatgttctat 380

                                                                       
Query: 181 tctaatgacccagaggtggttacaaaggctctcaatactttttctttgcttcattg---- 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 381 tctaatgacccagaggtggttacaaaggctctcaatactttttctttgcttcattgaaca 440

                                                                       
Query: 237 ttttcttgggggattctatctagtagctaggcatgttcaaaagtggggtgagatgttgca 296
               |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ----cttgagggattctatctagtagctaggcatgttcaaaagtggggtgagatgttgca 496

                                                                       
Query: 297 tcatttcagtctcactagagtgctctctgtatgtctctcttttctctcatttgagtacca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcatttcagtctcactagagtgctctctgtatgtctctcttttctctcatttgagtacca 556

                                                                       
Query: 357 aggtttcttaaggtacatttattccatggcctatattccttgctccccctcccctctact 416
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggtctcttaaggtacatttattccatggcctatattccttgctccccctcccctctact 616

                                                                       
Query: 417 cccctctccaacctttcttctctcctctcctgccctcccctctcctcacctcttctcccc 476
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 cccctctccaacctttcttctctcctcttctgccctcccctctcctcacctcttctcccc 676

                                                           
Query: 477 ctgcttcctttatgtgcatgttacatatgcacatagagaccatagttc 524
           | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagcttcctttatgtgcatgttacatatgcacatagagaccatagttc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)