BAC Information

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BAC

Clone NameMSMg01-493E10
Chromosome3 (Build37)
Map Location 113,257,976 - 113,258,290
singlet/doubletsinglet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207
Downstream geneAmy1, Rnpc3, Col11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493E10.T7 (MSMg01no493_e10.b1)MSMg01-493E10.TJ (MSMg01no493_e10.g1)
ACCAG570834AG570835
length755742
length of high quality
(start - end)		396 (44 - 439)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no493_e10.b1 PHD_FILE: MSMg01no493_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:44 2005CHROMAT_FILE: MSMg01no493_e10.g1 PHD_FILE: MSMg01no493_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACATATCTTTCGTCAACTACTCAAGTTCTGCTTGAAATTTGGCACAT
TAAGATTCTACCAGGAATTTGGGGAGACACCCGAAGGCCAATCCCGTCCT
AATGAGCTATAAGTAATTTATGGGTGCTAAGGTGGGGAAAAATTATACTC
CTTAGTGTTTTATCCACTGGTAAGCTGCCTTTGTTTAAGTAGTAACTTTC
CAGCCATGGTCACGTAGGCAACCCTACTTAAGAGCAATGGGGTCCCAAAT
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATGATAGATAGATAGATAGATGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATGATAGATAGATANATNNATNGATNNA
TANTTTTTATAATTATATTTTTATTTTTTTTTTTTTATATTNATTTATTT
TTTTATTTTTTTTTTTATTTTTTATTATTTATTTTTTTTTTATATTATAA
TTTTTTATATTGATTTTTTTTTATAATATTTTTTATATTTTTATAATTAT
AAATTTTATTTTTTAATTTTATTTTTGTTATTTATATAGATTTTTTTATT
TTTAATATTTTTATTTATAGATGAATTTTAGTTTATAATTATTTAGATAT
TATAAAGAGTTATGGTGTATAATTTTTTTTTTTACAGGTGGTTTTTAAAT
ACTTA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAGATACAGGAG
AACACTGCTAAAGAGTTACAAGTCCTTAAAGCAAAACAGGAAAACACTGC
TAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGG
TAGAAGTCCTTATAGAAAACAGGAAAACACATCCAAACAGGTGATGGAAA
TGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAA
ACCCAAAGTGAGGCAACGCTGGTTTATAGAAACCCTAGGAAAGAAATCTG
GAAACATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGA
ATATCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGA
AAATGGAAAATGCAAAAAGATCCTAACTAAAAAAATCCAGGAAATCCAGG
ACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAA
GATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGA
AAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCT
ACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATA
TTAATCAGAACAACAATACNCTAAATAAAGATAGAATACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_e10.b1 MSMg01no493_e10.b1 CHROMAT_FILE:
MSMg01no493_e10.b1 PHD_FILE: MSMg01no493_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:44 2005
         (396 letters)



>mm_chr3_113257772_113258566
          Length = 795

 Score =  534 bits (276), Expect = e-156
 Identities = 306/316 (96%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatatctttcgtcaactactcaagttctgcttgaaatttggcacattaagatt 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatatcagtagtcaactactcaagttctgcttgaaatttggcacattaagatt 264

                                                                       
Query: 65  ctaccaggaatttggggagacacccgaaggccaatcccgtcctaatgagctataagtaat 124
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 265 ctaccaggaatttggggagacacccgaaggtcaatcccgtcctaatgagctataagaaat 324

                                                                       
Query: 125 ttatgggtgctaaggtggggaaaaattatactccttagtgttttatccactggtaagctg 184
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 325 ttatgggtgctaaggtggggaaaaa-tatacttcttagtgttttatccactggtaagctg 383

                                                                       
Query: 185 cctttgtttaagtagtaactttccagccatggtcacgtaggcaaccctacttaagagcaa 244
           |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 ccttggttcaagtagtaactttccagccatggtcatgtaggcaaccctacttaagagcaa 443

                                                                       
Query: 245 tggggtcccaaatatagatagatagatagatagatagatagatagatagatagatagata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggggtcccaaatatagatagatagatagatagatagatagatagatagatagatagata 503

                           
Query: 305 gatagatagatagatg 320
           ||||||||||||||||
Sbjct: 504 gatagatagatagatg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 795
Length adjustment: 9
Effective length of query: 387
Effective length of database: 786
Effective search space:   304182
Effective search space used:   304182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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