Query= MSMg01no493_e17.b1 MSMg01no493_e17.b1 CHROMAT_FILE:
MSMg01no493_e17.b1 PHD_FILE: MSMg01no493_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:46 2005
(607 letters)
>mm_chr3_139950222_139951228
Length = 1007
Score = 1151 bits (595), Expect = 0.0
Identities = 601/603 (99%)
Strand = Plus / Plus
Query: 5 gaattcatctttactgtagaagctaacgaatttgatatatttactttttcttttcccttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctttactgtagaagctaacgaatttgatatatttactttttcttttcccttc 264
Query: 65 ctttctttttttcttttggaattgagaaccttccactcttcacttgaaggctttgctttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttctttttttcttttggaattgagaaccttccactcttcacttgaaggctttgctttg 324
Query: 125 ccttatataacaacttattcaagaataaaactcaaagatctttccatgacagagggcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttatataacaacttattcaagaataaaactcaaagatctttccatgacagagggcctg 384
Query: 185 gggactaagaaaagatggttgggaaggtaggacttgcagcctgtagacagcatagaaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggactaagaaaagatggttgggaaggtaggacttgcagcctgtagacagcatagaaagg 444
Query: 245 tgtggctacagcctgagaggatagattaggactgaaagattcattaggaaagaatacact 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtggctacagcctgagagaatagattaggactgaaagattcattaggaaagaatacact 504
Query: 305 ttaaaatattaaaaacagatattttaaaagaaaatgagtaattaacaagtttcatgctaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaaaatattaaaaacagatattttaaaagaaaatgagtaattaacaagtttcatgctaa 564
Query: 365 tgtgttgctatgttctaagaaatttaaatgatctgatcaattacagaattttcattaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgttgctatgttctaagaaatttaaatgatctgatcaattacagaattttcattaaaa 624
Query: 425 ctactttgagttctacatttattgaaatgacaatatgtccccatgacaacacctaaaagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctactttgagttctacatttattgaaatgacaatatgtccccatgacaacacctaaaagc 684
Query: 485 acaaagttgcaaaatttctttttaaacccactaaggaaacctatacacattttgtgtgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaaagttgcaaaatttctttttaaacccactaaggaaacctatacacattttgtgtgtg 744
Query: 545 tgctctgtgtgtttacgtgcttgggtgtgtgtgcgtgtgaatgtgtgagtgtttgtatgt 604
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctctgtgtgtttatgtgcttgggtgtgtgtgcgtgtgaatgtgtgagtgtttgtatgt 804
Query: 605 gtg 607
|||
Sbjct: 805 gtg 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_e17.g1 MSMg01no493_e17.g1 CHROMAT_FILE:
MSMg01no493_e17.g1 PHD_FILE: MSMg01no493_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:46 2005
(584 letters)
>mm_chr3_140125191_140126175
Length = 985
Score = 1048 bits (542), Expect = 0.0
Identities = 576/590 (97%), Gaps = 6/590 (1%)
Strand = Plus / Minus
Query: 1 catgattgtatgtatt-----gggggggggcgacaactagaggtaaataatttttctttg 55
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 806 catgattgtatgtattggggggggggggggcgacaactagaggtaaataatttttctttg 747
Query: 56 aaatacaaatatggactctacattcattgatttttaccaattgtatatggatttttcaat 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaatacaaatatggactctacattcattgatttttaccaattgtatatggatttttcaat 687
Query: 116 gttatgtattgaatgcacaattatgcattaattattgacttatgtattcttttttgatat 175
|||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||
Sbjct: 686 gttatgtattgaatgcacaaatatgcattaattattgacatatgtattctttttggatat 627
Query: 176 atatggatatgtagatacatagaggaaatgttgtttaccctaatctaagcatctggaatt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atatggatatgtagatacatagaggaaatgttgtttaccctaatctaagcatctggaatt 567
Query: 236 tatattagatgttagaagtaatctagatactattttaattgtataagagaataagcatag 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tatattagatgttagaagtaatctagatactattttaattgtataagagaataagcatag 507
Query: 296 atcttgggcaaatgcattttttttacaaaagaattgagaattagtaaatcaagatattgg 355
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 506 atcttgggcaaatgcatttttattacaaaataattgagaattagtaaatcaagatattgg 447
Query: 356 -ttgtatccccacatcaatctcttattaatactgagaaaatgtccataataggaaagata 414
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 446 tttgtgtccccacatcaatctcttattaatactgaaaaaatgtccataataggaaagata 387
Query: 415 gagatcatgttaaatttacaacgaaatccttaatggtcttcaatcttggtggcaagcaca 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 386 gagatcatgttaaatttacaacaaaatccttaatggtcttcaatcttggtggcaagcaca 327
Query: 475 gtaacatgctcagcaatttcactgactgctaaaacttacatatttaacaagctaacacat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtaacatgctcagcaatttcactgactgctaaaacttacatatttaacaagctaacacat 267
Query: 535 tttaatataattacaccttaatttagcatactaatatgaaaataaaagat 584
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttaatataattacaccttaatttagcatactaatatgaaaataaaagat 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
