Query= MSMg01no493_h22.b1 MSMg01no493_h22.b1 CHROMAT_FILE:
MSMg01no493_h22.b1 PHD_FILE: MSMg01no493_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:03 2005
(520 letters)
>mm_chr3_51066781_51067700
Length = 920
Score = 901 bits (466), Expect = 0.0
Identities = 502/516 (97%), Gaps = 5/516 (0%)
Strand = Plus / Minus
Query: 5 gaattcccactcactaagtctcatctccgtggtaaagcgtgtgggccagcacatctccac 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattcccactcactaagcctcatctccgtggtaaagcgtgtgggccagcacatctccac 703
Query: 65 agcgctatgcacacatccttcctagttagagtaaaatcggaaagaaaggaaagccttagt 124
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 702 agcgctatgcacacatctttcctagttagagtaaaatcagaaagaaaggaaagccttagt 643
Query: 125 taaaaccttgtttcgttactttctgttgctgtggtgaaccccgggaccagagctccttgc 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 642 taaaaccttgtttcgttactttctgttgctgtggtgaa-cccgggaccagagctccttgc 584
Query: 185 agaaggaagggtttgcttggctctcagctacagaaagtgtagccacagtgctcacctcag 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 583 ----ggaagggtttgcttggctctcagctacagaaagtgtagccacagcgctcacctcag 528
Query: 245 ctcggtgcattttctccattacagctcatacagaggtcacagaggttaaatatgtcttaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctcggtgcattttctccattacagctcatacagaggtcacagaggttaaatatgtcttaa 468
Query: 305 aacatggcacgctcttttattcagttcccactaaaaacctttggctcaaggaacaaatat 364
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aacacagcacgctcttttattcagttcccactaaaaacctttggctcaaggaacaaatat 408
Query: 365 aattaaaacaaaaagacaatcactcaccactaggcaaatgatctgagcagatatggctcg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aattaaaacaaaaagacaatcactcaccactaggcaaatgatctgagcagatatggctcg 348
Query: 425 agagtccaaatggccgatctatgcatgtgagtcatttcaccattgttagctgtcaggaaa 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 347 agagtccaaatggccgatctatgcatgtgagtcatttcaccattgtcagctgtcaggaaa 288
Query: 485 tgcaggtgaagacacatggctgttccccttcactgt 520
|||||||||||||||| ||||||||||||||||||
Sbjct: 287 tgcaggtgaagacacacagctgttccccttcactgt 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_h22.g1 MSMg01no493_h22.g1 CHROMAT_FILE:
MSMg01no493_h22.g1 PHD_FILE: MSMg01no493_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:03 2005
(507 letters)
>mm_chr3_50892824_50893730
Length = 907
Score = 853 bits (441), Expect = 0.0
Identities = 482/507 (95%), Gaps = 18/507 (3%)
Strand = Plus / Plus
Query: 1 actgccgaagttttttataagctgaggaattacctggagaggactgaatttctgagtgca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actgccgaagttttttataagctgaggaattacctggagaggactgaatttccgagtgca 260
Query: 61 agccagcagctgccttgatccagaggccacctcaatcatccacaccagctggtctctggt 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccagcagctgcctcgatccagaggccacctcaatcatccacaccagctggtctctggt 320
Query: 121 ggagagagggcgaaggcaggccggatcagcctggcttagggccgcgtggccagaggggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagagggcgaaggcaggccggatcagcctggcttagggccgcgtggccagaggggta 380
Query: 181 aaaaacataggttcacacaggcatttaaccttggttaagcagtgtggtatggctgaggct 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aaaaacataggttcacacaggcatttaaccttgattaagcagtgtggtatggctgaggct 440
Query: 241 taaaacaaggctggaacattttctcgcttattatcaccttgataacctgttcttgtagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaacaaggctggaacattttctcgcttattatcaccttgataacctgttcttgtagct 500
Query: 301 aggaaggggtgtcacaaagaagggagggtggaggggagccgccagaagggagggcgggcc 360
|||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 aggaaggggtgtcacaaagaagggagggtggaggggagcctc------------------ 542
Query: 361 acagcactgagccagaggagaggagctgctgttttcagagtgcggtttggaagaaaggaa 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 543 acagcactgagccagaggagaggagctgctgttttcagagtgcagtttggaagaaaggaa 602
Query: 421 agatgttggtctctgtgtagttctccttttaaatagaaattgttttctccaggctgcata 480
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 603 agatgttgctctctgtgtagttctccttttaaatagaaactgttttctccaggctgcata 662
Query: 481 gctaatcgcttcatgggaaaggggaga 507
|||||||||||||||||||||||||||
Sbjct: 663 gctaatcgcttcatgggaaaggggaga 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
