ATGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCAACTTACCGGTTTTGGGGGGTTGTAGGATATCTCTAGG
ACATATCTGACATGGGATAAAGAAGGTACCCATGAATGGGGTAAGCTTAG
CCTAGATGCCTAACAATGGTGATAAGGCACCAGAAAAGACCACCTCCTGT
AGTCAGGGAGAATCTCAGTGGATAGATAAAAGAGACCTATCTATCTACAA
AACTTTTCATCTAAAAGAGTAAAGATATAAATGTGCTAAGATAGTCCTTT
TTGTTGGGAATAAAGAAGGTTGGAGAAGGTTGACTCTTGCGCATGCTCGA
CTGGCCAGGAAGAACGACGCTGCAACAGGATCTTTCTGCAAACGTTTGTT
GGGAGAGCTTGATTGTAGAGGCGAAAAGACCTCCAGCCCAGAACTGGTGC
TGCTTATATAGGCCTAGGAGAGGCGTGTCTCACATCTGATTGGTTAACTT
GTCTCTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTTAACTTGT
CTCTCATCTGATTGGTTAACTTTTGTCAATTCTCAAAACCTCACCTTGGC
AAAAGAACCTTTACTGGCTATGTATGTGTGGTGGACAGCTGTAGCCAACT
GCCACTCTGCAACTGCCACTCTGTAACTGCCACTCTGTAACTGCCACTCT
GTAACTGCCACTCTTGTATTGCCAC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTATATGCTTCTCAGGTTCCTATG
GAAACTACATTCCTGGTATGAATTATTTTACTCCATCTTTAAATCATCAG
CCTATCATCTGTAAACCTATTTGCCTTTGACTCTCCTGCTCCCTATTTCA
TTTCTAAAATTCCTGTGTGATTATCTAGGATCCATTTGCATAATCCAGGT
AAAACTGTATATCTCAAGATTATTAATCAAATTTATAACACTCCTTTTGC
CATGTGAAATGACATATTCAAGGGCATTACTCTTAGAAGGTAGGCACTTG
GGGAGTGGGAACATTATTTCTGCCTATCATAGGGAATAAAGCAATTCTGG
TTTATATGAAATTTCTTTTTGTATATACATGGAGTTAGATGGGGGTTAGA
AAATTTTTTCTTGTCACATATCTAATAACATTAGGGTTTTTTTTAATAAT
AAATGTGTAGCATAGGTAGATTATTTAAAAATAGAAGAGGATGATACATT
CCCTAAAGATGAGGAATCATGAACTTGTATTTGATACTTATATTTTAATG
CCAGGTTTGTTCAGTCATTCCAATGTTAATGACTAGGAAAAACTGTGTAT
AATAATTATTAAGATAATTTTGTATTAGTTAGATTAATGTTGTGATAACT
ACTAATATTTAGATATAAATTGAAAAGTTATTTT

Query= MSMg01no493_k11.g1 MSMg01no493_k11.g1 CHROMAT_FILE:
MSMg01no493_k11.g1 PHD_FILE: MSMg01no493_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:17 2005
         (605 letters)



>mm_chr3_73600246_73601249
          Length = 1004

 Score =  901 bits (466), Expect = 0.0
 Identities = 490/498 (98%), Gaps = 1/498 (0%)
 Strand = Plus / Minus

                                                                        
Query: 108  tctcctgctccctatttcatttctaaaattcctgtgtgattatctaggatccatttgcat 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 tctcctgctccctatttcatttctaaaattcctgtgtgattatctaggatccatttgcat 945

                                                                        
Query: 168  aatccaggtaaaactgtatatctcaagattattaatcaaatttataacactccttttgcc 227
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  aatccaggtaaaactctatatctcaagattattaatcaaatttataacactccttttgcc 885

                                                                        
Query: 228  atgtgaaatgacatattcaagggcattactcttagaaggtaggcacttggggagtgggaa 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  atgtgaaatgacatattcaagggcattactcttagaaggtaggcacttggggagtgggaa 825

                                                                        
Query: 288  cattatttctgcctatcatagggaataaagcaattctggtttatatgaaatttctttttg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  cattatttctgcctatcatagggaataaagcaattctggtttatatgaaatttctttttg 765

                                                                        
Query: 348  tatatacatggagttagatgggggttagaaaattttttcttgtcacatatctaataacat 407
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 764  tatatacatggagttagataggggttagaaaattttt-cttgtcacatatctaataacat 706

                                                                        
Query: 408  tagggttttttttaataataaatgtgtagcataggtagattatttaaaaatagaagagga 467
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  tagggttttttaaaataataaatgtgtagcataggtagattatttaaaaatagaagagga 646

                                                                        
Query: 468  tgatacattccctaaagatgaggaatcatgaacttgtatttgatacttatattttaatgc 527
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 645  tgatacattccctaaagatgaggaatcatgaacttgtatttgatacttatatttaaatgc 586

                                                                        
Query: 528  caggtttgttcagtcattccaatgttaatgactaggaaaaactgtgtataataattatta 587
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  cagctttgttcagtcattccaatgttaatgactaggaaaaactgtgtataataattatta 526

                              
Query: 588  agataattttgtattagt 605
            ||||||| ||||||||||
Sbjct: 525  agataatgttgtattagt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space:   591430
Effective search space used:   591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)