CTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGATTTTACCCCTCACTATGTAGTAGTGGTTTTCTTAGTTGTTT
TGTTGTTGTTTTTAATCTTACTATTTGATGCTATTCTTCTTAGTTTGCAC
TATACTGATTAAAACTTAGGACGGTTTTGGGTGTAACTAAAATTTCCAAC
TGAAATTACTTTGATTTCAGCTGATCAGAACTCATCTAGCATAGGCTGAC
CCAGCCTTGGCTGACTCAGGGGTTCTGAGACAGAATAAAGAGGAAGGATA
CAACCGGGAAGAGGCAGCGAATAGACAATTAAAGCTCCATTGCTTCCCCC
TCTGAGCCCCAACAAAGGTCCTTATCTCGACTCTCAAACTCAAGGAAAAC
AGCCAACCCAGTGGAAGTGATGTGTACTTTGCCATTTTGGTTTCTCTCCC
TTGTTTTTCTTAACATTTGTCGGCACTCATTCAGAACGCATTCATTTTTC
AAACTCTTAGTCTCATCCCCTGACTGAACTTTTTGAGAGTTCCATTTTAT
TAGAAACATTTGGATTCTTCTTTGTTAGACACATGCCAGTTAGTTGTAAA
ATGATTAAGGGTGTGCTGTATTCATCCCTATCACTTTTAATCCCTCTACC
CGAGCCCTGCCAGCATGCCCACCCAGGCTTCTCAGAGCTCCTGTTTTAAT
TACCATACTCGCCCACTCCTCGGCCTTGGAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGTCTTTATTTGAAAACCGTAACTTATCTACT
TTAACTTTGGGAAAAAAAATCTCAGTTAATCTAGAAATATAAGAATCACT
TCAAAAAGTATTTATTATTGTTAAGAATTTATTTTTATTTTATCTTATGA
ATTTAGAATCTCATGCTGAAATACAATATTTAAAACATTTTAAAATCATT
TATTTTTGTTTGTATAGATGTTTTGCCTGCATGGTGTGTTCTGTGCATGA
TGTACATGCAGTGTTCACTTATTTCAGAAAAGGGAATCAGATCTTTCTGG
ACCTGGAGATACAGATGATTATGAGCCACCATGAGGGAATTGAACCTCAG
TCTCCTGAAAGAACAGCCAACATTCTTAGCCACGGAGTTATTTCTCTAGC
CCCTGTATAATGTATTTTGATTAAGTCTATCCCCATTCCCTTCCTTCCAA
TTTTTCTCCTATCACTACTATAACTATTCCCTTCCAATTTCATGTGTTCT
TCCTATATTATTTTGCACCCCAATCCTGAAATTCACTTAATTCTGCTAGT
ACAAGAACGGTTATAGGGCTAACTATTGGAGCTAGGTAGCCTCTTGGGGT
CTTTAATCCTTAAGAAATTGTTTTCCTTCTCTGAGATGCTTTTATCAGTC
AATAGATCTTCAAAGAAGTTGGGACTTCCTGACCACCTCAATTTGGGGAT
TT

Query= MSMg01no493_o17.b1 MSMg01no493_o17.b1 CHROMAT_FILE:
MSMg01no493_o17.b1 PHD_FILE: MSMg01no493_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:37 2005
         (585 letters)



>mm_chr3_117834265_117835249
          Length = 985

 Score = 1116 bits (577), Expect = 0.0
 Identities = 583/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtagtagtggttttcttagttgttttgttgttgtttttaatcttactatttgatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtagtagtggttttcttagttgttttgttgttgtttttaatcttactatttgatgct 260

                                                                       
Query: 61  attcttcttagtttgcactatactgattaaaacttaggacggttttgggtgtaactaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttcttagtttgcactatactgattaaaacttaggacggttttgggtgtaactaaaa 320

                                                                       
Query: 121 tttccaactgaaattactttgatttcagctgatcagaactcatctagcataggctgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccaactgaaattactttgatttcagctgatcagaactcatctagcataggctgaccc 380

                                                                       
Query: 181 agccttggctgactcaggggttctgagacagaataaagaggaaggatacaaccgggaaga 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 agccttggctgactcaggggttctgagacagaataaagaagaaggatacaaccgggaaga 440

                                                                       
Query: 241 ggcagcgaatagacaattaaagctccattgcttccccctctgagccccaacaaaggtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ggcagcgaatagacaattaaagctccattgcttccccctctgagccccaacaaagctcct 500

                                                                       
Query: 301 tatctcgactctcaaactcaaggaaaacagccaacccagtggaagtgatgtgtactttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctcgactctcaaactcaaggaaaacagccaacccagtggaagtgatgtgtactttgc 560

                                                                       
Query: 361 cattttggtttctctcccttgtttttcttaacatttgtcggcactcattcagaacgcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattttggtttctctcccttgtttttcttaacatttgtcggcactcattcagaacgcatt 620

                                                                       
Query: 421 catttttcaaactcttagtctcatcccctgactgaactttttgagagttccattttatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttttcaaactcttagtctcatcccctgactgaactttttgagagttccattttatta 680

                                                                       
Query: 481 gaaacatttggattcttctttgttagacacatgccagttagttgtaaaatgattaagggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaacatttggattcttctttgttagacacatgccagttagttgtaaaatgattaagggt 740

                                                        
Query: 541 gtgctgtattcatccctatcacttttaatccctctacccgagccc 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgctgtattcatccctatcacttttaatccctctacccgagccc 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)