BAC Information

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BAC

Clone NameMSMg01-494C14
Chromosome3 (Build37)
Map Location 132,143,335 - 132,143,815
singlet/doubletsinglet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494C14.T7 (MSMg01no494_c14.b1)MSMg01-494C14.TJ (MSMg01no494_c14.g1)
ACCAG571507AG571508
length736735
length of high quality
(start - end)
682 (55 - 736)570 (64 - 633)
definitionCHROMAT_FILE: MSMg01no494_c14.b1 PHD_FILE: MSMg01no494_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:56 2005CHROMAT_FILE: MSMg01no494_c14.g1 PHD_FILE: MSMg01no494_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGATTT
CCCAAAACAATCATCCATTCTGACCAAGTAGGTTTCATCCCAGGGATGCA
GGGATGGTTCAATATATGGAAATCCATCAATGTAATCCAGTATATAAACA
AACTCAAAGACAAAAACCACATGATAATCTCGTTAGATGCTGAGAAAGCA
ATTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAA
TAGCCAACATCAAAGTAAATGTTGAGAAGCCTTAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGTCCAACCTCGCCCTACCTATTCAACATTGT
ACTTGAAGTCCTAGCCAGAGAAATTAGACAACAAAAGGAGATCAAGGGAA
TACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTCAAAATTCCACCAGAGAACTCCTAAGCCT
GATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAN
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCG
AAAAAAACAAAACAAAACAAAAAGAACGAGGACAACCTTAGTTTTGCAGG
CAAATTGATGGAACTAGAAAATATCATCCTGTGTGAGGTAACTCACACCT
AAAAGGACATGCATAGCTTGTACTCATAAGTGAATATTAGCCAAAAAAAA
AAGTACAGAATACCCAAGATACAGTCCACAGAACTCAAAGCAGTCAACAA
GTTGAGGTGCCCAAGTGAGGACTCCTCAATCCCACTTGGGAGGGAGAAGA
AAGCTAAGACTGTGCACAGAAGACCTAGTCTATGTTGGATGCAAATTCAA
ATACTGTTTAGTGTGTTTCTGTTTTCCCTTTGTAAAAGAAAACTGTATTA
CAAGCTTAATTCAACATCTTCAGGATATTTAAAAAAAATAAAAGCATGCA
TAAACTATGGTTTCTATTGACTGTAATTCTCATTTTTTTCTTTTTTTGAG
AATTTTATACAGGATATTTTATTTTTTTTCAAAATATCTTCTTCTCTCAC
ATACCACATCTTGACCAGTTTCTCTTTGCTCTACTCCTTTCAGAACTCCC
ACCTCTCCTTTCCTCCCCCATCCCCAGAAAAGAGCAAGCCTTCCAGGGGC
ATAAGCTGAACATGATCTAACTAGATACCAAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_c14.g1 MSMg01no494_c14.g1 CHROMAT_FILE:
MSMg01no494_c14.g1 PHD_FILE: MSMg01no494_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:56 2005
         (570 letters)



>mm_chr3_132142844_132143815
          Length = 972

 Score =  835 bits (432), Expect = 0.0
 Identities = 468/482 (97%), Gaps = 7/482 (1%)
 Strand = Plus / Minus

                                                                       
Query: 95  atggaactagaaaatatcatcctgtgtgaggtaactcacacctaaaaggacatgcatagc 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | 
Sbjct: 972 atggaactagaaaatatcatcctgtgtgaggtaactcacacctaaaaggacatgcgtggt 913

                                                                       
Query: 155 ttgtactcataagtgaatat-tagcc---aaaaaaaaaagtacagaatacccaagataca 210
           |||||||||||||||||| | |||||   |||||||||||||||||||||||||||||||
Sbjct: 912 ttgtactcataagtgaat-tctagccaaaaaaaaaaaaagtacagaatacccaagataca 854

                                                                       
Query: 211 gtccacagaactcaaagcagtcaacaagttgaggtgcccaagtgaggactcctcaatccc 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gtccacagaactcaaagcagtcaacaagttgaggtgcccaagtgaggactcctcaatccc 794

                                                                       
Query: 271 acttgggagggagaagaaagctaagactgtgcacagaagacctagtctatgttggatgca 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 acttgggagggagaagaaagctaagactgtgcacagaagacctagtctatgttggatgca 734

                                                                       
Query: 331 aattcaaatactgtttagtgtgtttctgttttccctttgtaaaagaaaactgtattacaa 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aattcaaatactgtttagtgtgtttctgttttccctttgtaaaagaaaactgtattacaa 674

                                                                       
Query: 391 gcttaattcaacatcttcaggatatttaaaaaaaataaaagcatgcataaactatggttt 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttaattcaacatcttcaggatatttaaaaaaaataaaagcatgcataaactatggttt 614

                                                                       
Query: 451 ctattgactgtaattctcatttt--tttctttttttgagaattttatacaggatatttta 508
           ||||||||| || ||||||||||  |||||||||||||||||||||||||| ||||||||
Sbjct: 613 ctattgactatatttctcattttcttttctttttttgagaattttatacagtatatttta 554

                                                                       
Query: 509 ttttttttcaaaatatcttcttctctcacataccacatcttgaccagtttctctttgctc 568
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttcttttcaaaatatcttcttctctcacataccacatcttgaccagtttctctttgctc 494

             
Query: 569 ta 570
           ||
Sbjct: 493 ta 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 972
Length adjustment: 10
Effective length of query: 560
Effective length of database: 962
Effective search space:   538720
Effective search space used:   538720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)