BAC Information

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BAC

Clone NameMSMg01-494H23
Chromosome3 (Build37)
Map Location 50,232,125 - 50,389,629
singlet/doubletdoublet
Overlap geneSlc7a11, EG621304
Upstream geneLOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
Downstream geneLOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494H23.T7 (MSMg01no494_h23.b1)MSMg01-494H23.TJ (MSMg01no494_h23.g1)
ACCAG571763AG571764
length791789
length of high quality
(start - end)		561 (59 - 619)525 (60 - 584)
definitionCHROMAT_FILE: MSMg01no494_h23.b1 PHD_FILE: MSMg01no494_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:21 2005CHROMAT_FILE: MSMg01no494_h23.g1 PHD_FILE: MSMg01no494_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,389,069 - 50,389,629)(50,232,125 - 50,232,649)
sequence
CCGCTAAACGACTCACTATAGTCAGAGAATCCGCGGAATTCAGCAAGGTC
TCGTAAACACAAGCCAGGTTAAGGCACATCCCAGAGCCGAATGTCTTAGC
TCCTTTTCAATATTTCAGCACTTTTCCCCCAGGTTCCTTCTCAACACAGC
TGTTTCGTCCCTTTCATTTCTTTCTGTAACCTTTATCTTCGCCCTTGCTG
CTGTTCCCCATCTCATCTCCCACAAAGGAGCCTTTATTTCTGTGTGTAAG
TTCAGTTGCCGTATGCTTCCTGTCATTCAGAATGATGCTGTGCATTGAGA
TGAAGATCTCTCTGAGAAGCTACCTGCCCGGGATGGCGGGGTGAGAAAAG
AGAGGGGAGGATACAAATAATAGACAAACATTTTCCTGTAAGTAACCATG
TTGGTGGCACGTTCATGAGAACACAAGTTGTTAAGAGTGGAGTTCAGAAA
CTGAAAACTGAAGGGAAGAAGGGAAGGGCATTAAATGAGCTGTGGTCTAC
TGATGAGAGAAAGAAAGTCAGGATACTTGAAAAAGCCATGATCCAAGTAT
TAAAGGCTCAAGAAGAATCCAGTGATCAACCCTTCAAATCCACTGAAGGC
CTCTTTGCATATTTTAAAATGGGAATGGTTCAATTTGTTTTTAAGAGCTG
CTTCTAATACTTTTCTGCAATGGTCGATTGGCAGACCCCAACCTGGCAAC
ATTTTTTTTTCAAGCGACTATTTGTTATGTCTAGACACACCNACACAGCT
TTCTACCGGGTTTGGTTTTTTCACTCGTGCAGAGCAGAAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGACTTCCAACTAGATAATGAGGGTGAGTTTTAATCTACC
CTGCAAGTATTGGTTGCCAACATATGTTTTCTACTGAAGCAAAAGGTCTT
GGGACTTTTCAGCTTAGGATGCACAGTGAGTCTGAAGCCAGAAGATTTTC
TTCTTAAGATACTGTTGACAGTTTCCTAAACAGCCACCCCCGTCCACATC
AAAGACGGAAAAGTGGCTATTCATCCTGGCATTGCCAATAATTGCCAATA
ATCTCTTCCTGGCCCAGGTAGATAACATATTTTTGTTGAATGAATGAGTA
AATGAATGAATGAACTGGGTTCTCAAAAATGTTAAAGCACAGTTTTAATG
GTGGTATTCTACGCTTTCATTTTCTTCTCAATGGAGTGTTCAGGATTATT
TCTACACAGTAAATTTCAACTTTATGTTCTTGCCAAGAACATAGGCACAG
TATAGCCCAAAACATCAGCTATTTCATTCCTGACATTTATGGGTTTCACC
AATAAGCTTTACTTTAGTAAAGATTATTCTCTCTTAAAAAGATTTTTAAA
TGCATAAAATTATTTCTCATGGCATTTAAAGAAACACCAGTGGAATTCAT
ACTATTCAAATTANAATTGTGTGGGATCGGGAGNTCTCACTGGGTTTCCC
NTGTATAATATAATCTATTTAGTTCATTCCCTAATTAAGAATTGGGGAGA
TGCATTAATAGGGCATAACAAAGTGGAAATTAAACATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_h23.b1 MSMg01no494_h23.b1 CHROMAT_FILE:
MSMg01no494_h23.b1 PHD_FILE: MSMg01no494_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:21 2005
         (561 letters)



>mm_chr3_50388869_50389829
          Length = 961

 Score = 1085 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagccaggttaaggcacatcccagagccgaatgtcttagctccttttcaatatttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acaagccaggttaaggcacatcccagagccgaatgtcttagctccttttcaatatttcag 702

                                                                       
Query: 61  cacttttcccccaggttccttctcaacacagctgtttcgtccctttcatttctttctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cacttttcccccaggttccttctcaacacagctgtttcgtccctttcatttctttctgta 642

                                                                       
Query: 121 acctttatcttcgcccttgctgctgttccccatctcatctcccacaaaggagcctttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acctttatcttcgcccttgctgctgttccccatctcatctcccacaaaggagcctttatt 582

                                                                       
Query: 181 tctgtgtgtaagttcagttgccgtatgcttcctgtcattcagaatgatgctgtgcattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tctgtgtgtaagttcagttgccgtatgcttcctgtcattcagaatgatgctgtgcattga 522

                                                                       
Query: 241 gatgaagatctctctgagaagctacctgcccgggatggcggggtgagaaaagagagggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gatgaagatctctctgagaagctacctgcccgggatggcggggtgagaaaagagagggga 462

                                                                       
Query: 301 ggatacaaataatagacaaacattttcctgtaagtaaccatgttggtggcacgttcatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggatacaaataatagacaaacattttcctgtaagtaaccatgttggtggcacgttcatga 402

                                                                       
Query: 361 gaacacaagttgttaagagtggagttcagaaactgaaaactgaagggaagaagggaaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaacacaagttgttaagagtggagttcagaaactgaaaactgaagggaagaagggaaggg 342

                                                                       
Query: 421 cattaaatgagctgtggtctactgatgagagaaagaaagtcaggatacttgaaaaagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cattaaatgagctgtggtctactgatgagagaaagaaagtcaggatacttgaaaaagcca 282

                                                                       
Query: 481 tgatccaagtattaaaggctcaagaagaatccagtgatcaacccttcaaatccactgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgatccaagtattaaaggctcaagaagaatccagtgatcaacccttcaaatccactgaag 222

                                
Query: 541 gcctctttgcatattttaaaa 561
           |||||||||||||||||||||
Sbjct: 221 gcctctttgcatattttaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_h23.g1 MSMg01no494_h23.g1 CHROMAT_FILE:
MSMg01no494_h23.g1 PHD_FILE: MSMg01no494_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:21 2005
         (525 letters)



>mm_chr3_50231925_50232849
          Length = 925

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacttccaactagataatgagggtgagttttaatctaccctgcaagtattggttgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacttccaactagataatgagggtgagttttaatctaccctgcaagtattggttgcca 260

                                                                       
Query: 61  acatatgttttctactgaagcaaaaggtcttgggacttttcagcttaggatgcacagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatgttttctactgaagcaaaaggtcttgggacttttcagcttaggatgcacagtga 320

                                                                       
Query: 121 gtctgaagccagaagattttcttcttaagatactgttgacagtttcctaaacagccaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgaagccagaagattttcttcttaagatactgttgacagtttcctaaacagccaccc 380

                                                                       
Query: 181 ccgtccacatcaaagacggaaaagtggctattcatcctggcattgccaataattgccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtccacatcaaagacggaaaagtggctattcatcctggcattgccaataattgccaat 440

                                                                       
Query: 241 aatctcttcctggcccaggtagataacatatttttgttgaatgaatgagtaaatgaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctcttcctggcccaggtagataacatatttttgttgaatgaatgagtaaatgaatga 500

                                                                       
Query: 301 atgaactgggttctcaaaaatgttaaagcacagttttaatggtggtattctacgctttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaactgggttctcaaaaatgttaaagcacagttttaatggtggtattctacgctttca 560

                                                                       
Query: 361 ttttcttctcaatggagtgttcaggattatttctacacagtaaatttcaactttatgttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttcttctcaatggagtgttcaggattatttctacacagtaaatttcaactttatgttc 620

                                                                       
Query: 421 ttgccaagaacataggcacagtatagcccaaaacatcagctatttcattcctgacattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgccaagaacataggcacagtatagcccaaaacatcagctatttcattcctgacattta 680

                                                        
Query: 481 tgggtttcaccaataagctttactttagtaaagattattctctct 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggtttcaccaataagctttactttagtaaagattattctctct 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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