Query= MSMg01no494_p04.b1 MSMg01no494_p04.b1 CHROMAT_FILE:
MSMg01no494_p04.b1 PHD_FILE: MSMg01no494_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:54 2005
(665 letters)
>mm_chr3_128191663_128192723
Length = 1061
Score = 1232 bits (637), Expect = 0.0
Identities = 657/665 (98%), Gaps = 4/665 (0%)
Strand = Plus / Plus
Query: 1 accgaatggcagaggagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgc 260
Query: 61 aaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatgaaaaatt 320
Query: 121 caggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt 380
Query: 181 gggattgcaagcttgtacaaccactttggaaatcagtctggcggttccttagaaaattgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggattgcaagcttgtacaaccactttggaaatcagtctggcggttccttagaaaattgg 440
Query: 241 acatagtactaccggaggatccagcgatacctctcctgaacatatatccagaagatgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatagtactaccggaggatccagcgatacctctcctgaacatatatccagaagatgtcc 500
Query: 301 caacgggtaagaatgggttttgtatagtaagtgacaaacattagtctgtttatcttgtca 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacgggtaagaaggggttttgtatagtaagtgacaaacattagtctgtttatcttgtca 560
Query: 361 ggtaaatctatatgtggtatttaaaaatttggaaaaattcaatgcctatttaaatggata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtaaatctatatgtggtatttaaaaatttggaaaaattcaatgcctatttaaatggata 620
Query: 421 attgctttttccctggttttgtgaaaattagtctaatatacaatatatcagatataaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgctttttccctggttttgtgaaaattagtctaatatacaatatatcagatataaaat 680
Query: 481 agttaaagctctagggactgtataccaaaatttaaggtagttgttattagatattatgag 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 agttaaagctctagggactgtataccaaaatttaaggtagtt---attagatattatgag 737
Query: 541 aatttactctgccacaaatctagtaattggttgagatgtacttatctagtcaagaaaacg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aatttactctgccacaaatctagtaattggttgagatgtacttatctagtcaagaaaacg 797
Query: 601 acatgttgaaaaaacaatgataaattcaggaagactttcaaagttagcatatattttttt 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acatgttgaaaaa-caatgataaattcaggaagactttcaaagttagcatatattttttt 856
Query: 661 gtttt 665
|||||
Sbjct: 857 gtttt 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1061
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1051
Effective search space: 688405
Effective search space used: 688405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_p04.g1 MSMg01no494_p04.g1 CHROMAT_FILE:
MSMg01no494_p04.g1 PHD_FILE: MSMg01no494_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:55 2005
(628 letters)
>mm_chr3_128337992_128339018
Length = 1027
Score = 1114 bits (576), Expect = 0.0
Identities = 609/620 (98%), Gaps = 3/620 (0%)
Strand = Plus / Minus
Query: 10 tttataggtatgagcattttcagtgcatgtaggtctgtgtaccatgtgtatgtccagtgc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 tttataggtatgagcattttcagtgcatgtaggtctgtgtaccatgtgtatgtccagtgc 968
Query: 70 ccacaaaagccagaagagggcctcagatcctcgggaacagagttatgcttcttgaaagcc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 ccacaaaagccagaagagggcctcagatcctcgggaacagagttatgcttcttgaaagcc 908
Query: 130 accatgtgggtcctgagaatcaaaccctagtcctctgcaggagcaagaggtgctgtaaat 189
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 907 accatgtgggtcctgggaatcaaaccctagtcctctgcaggagcaagaggtgctctaaat 848
Query: 190 tgctgtgccatttcgctagctgagaggaattcttctgagagctaggattgggattttaac 249
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 847 tgctgtgccatttcgctagttgagaggagttcttctgagagctaggattgggattttaac 788
Query: 250 ttgctcccgaccaagaagtggcatgcacctatgccaacaacacttgatccttcttcctat 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttgctcccgaccaagaagtggcatgcacctatgccaacaacacttgatccttcttcctat 728
Query: 310 gactctcctaagaagtactgaagcactgggtagacagagagctgtgcagggaacggcagc 369
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gactatcctaagaagta-tgaagcactgggtagacagagagctgtgcagggaacggcagc 669
Query: 370 ccgaagtggaaagagtgtcagtgcctctagcaaaggcttagtgattagtgcagaaagaaa 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ccgaagtggaaagagtgtcagtgcctctagcaaaggcttagtgattagtgcagaaagaaa 609
Query: 430 tctttgtttttgtttccagatcaagactatgcatatttctccgtgtcttcatgttgcctt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctttgtttttgtttccagatcaagactatgcatatttctccgtgtcttcatgttgcctt 549
Query: 490 cagaggaaatttagctctc-gattgagtaaagtgtttctatggttactcctgttttagaa 548
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 548 cagaggaaatttagctctcagat-gagtaaagtgtttctatggttactcctgttttagaa 490
Query: 549 gtagtttagaatacaatttcttaaactgtacaataggtatctaagtgtaacaaaatctgg 608
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 489 gtagtttagaagacaatttcttaaactgtacaataggtatctaaatgtaacaaaatccgg 430
Query: 609 aggcaaagcattctgaccac 628
||||||||||||||||||||
Sbjct: 429 aggcaaagcattctgaccac 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
