BAC Information

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BAC

Clone NameMSMg01-494P14
Chromosome3 (Build37)
Map Location 4,757,025 - 4,757,716
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3, EG620382, EG667759
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494P14.T7 (MSMg01no494_p14.b1)MSMg01-494P14.TJ (MSMg01no494_p14.g1)
ACCAG572127AG572128
length7281,639
length of high quality
(start - end)
695 (34 - 728)---
definitionCHROMAT_FILE: MSMg01no494_p14.b1 PHD_FILE: MSMg01no494_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:56 2005CHROMAT_FILE: MSMg01no494_p14.g1 PHD_FILE: MSMg01no494_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAAAA
GTGAATGCAGTATGCATAATTTGTGCTTTGTTATGTTGTCAGTATTATGG
CTGTGACTCACCATTTAAATATAAAAATGAAAATTTGTTTGAGACTCTAT
GGTTTATCTAAAGCTAGTGAGATAGTTTCTAACTATATTGAATTCAGTAA
ACTGAGTAATAAGAACATCTACACAATTACTCAAAAGTAAAACATAGTTA
ATGCCACAAAACTGGCATTCTCTGTATCAGCAAACACTGCTGACTACATA
TGGTCTTCTTAGTTGCCTTGCAGAGGAACTGTCTGCTTTTCGAAGCTGTT
GAGAGGAGCATGCCAAAGAATAAATTGTGGTTGGAATACTTTTTCCCTTC
TAAAGTTCTGTGTATAAAGCATCCAAACATATTTGAATCATCATGGTAAT
TTGAGAAGGAAAGGTAGGCAACATTGTAATTTAGTGATTTTTTTTTCAAG
TGAAATTTTTGCATTAGCATTTGGACTTACCTCAGCAGTGTTTCATATGA
TGCTATGATTTCATTTTCATTGAAAGGATGAGTAATTTGGCTTCATTCTG
GGAGAATTAGCCAGGGCATTTTTGTAGGATTAGAGCATTTCTCTAGCTAT
GTATAAATTTGTTACATCAGGAAAACTAGTCCTAAAATTAGCATCATATA
TATGACTACCTTAGCATCAAACATTTTG
ATACACATCACGTAACAACTCATACATCAATATATTACTCTTATCCAATA
TATAATATATNACAGAAATAGAACAGTTTCCAGAACTACGCTAAATCACC
ATATATCAACACCCGCTATGCCCCTCGTCATATGATTCGATCATGACAGA
CTGCTCCGATAACGATGACACAGCGAAGGATCAACGCGTCACATATGACT
AAGATCTCCACAGACACTATACGTACACATCGCGGATATTATATAAGAAA
CGAACGCGCGACGTCGCGCGATATCCTGCATCTTGATTATTGTACTGTTG
CTTTTTCGTCCCGCACGTCTGTATATCGTCGTACCGCTGACTTTGCGCAG
GCTTATGCGCGCTGCTCATTATTCGCGCTGCGCAGTATCTGGTATATCGC
TTACGGCGATGCATGATATAGGCGTCCGCGTNGTGTGTCCGAGACGCGTA
TTCGCCGCGACGTGAGCGCTATGTGTGTATCGATCTGCTGATATTACGCA
CNACAGCTGACGAGTCGTCGTGAGATAAGGCTAGCTGGTCCTACTCTGTT
ATCGCCGGATGCGGGTCGACCCACCGATATGCGCTAATGCTCTGCGATGT
CAGTCCTAGGTATAATATGTTCGGGACTACCACGGCGCCGCATAATACAT
AATGGTATTACCGAGCGCATATTGGCGACAATCAATACTATATCACGGTT
CATTCTCTCACTTAGCGCACGAGATAATAAGTCTAAAGAATTGAGAGACG
CTAAGCACGCATACCATACTGCATATCTATACGCAGTCTACGACCGATTA
CACGCCACGCAGCCGAAATATACGCGGAGACTCGATATGACCGATCCCGG
ACGAGAGTGCGACATTGAGACGGAGATGGAGTGAACACGAATGTGACGCC
AACTATCTCTGCTGTGACNCTAATATACCCATTATTATAAAGGGCCGAGT
AAACGAGGTGAAATACGATAGTATCGCACGTCTATAGACACATATATGGT
CATAGATATATAATCAATCGCGATATTACGTAACGCGAGATNATATCNGC
GTNANATAGATATACATAGTCGCGCGCGATGTATTAATGCGCGCTGAGTG
ATTTCGACACGAGTGATGTATACGCAAATACATTCGCTCGAGAGACAATT
GATGCACAGACGACTACGCGCGATAACGCGTGTCTTAATTCGTATATAAG
AGCGAGCGCGAGCGCGATGATAATATCAGTGCGCACACAGAGAACGTACT
GTGTGATTGCAGATGCTCATATAAGTGAGACAGATACACGAGCTACACGG
ATATATGATTTATATATACGCGAGNGGNGCGCGCTCTAACATNTGATCNC
CACTATCCACATCATATTTATATTTACCGCACCTTGCTATCGCCGCATAT
TACTCCCAGCGCTCAGTCACATGTATGATATACCCGTCGCCGCCCTATCA
CCGAGATGGTGCGCATAAGTACGTGACACACGGCTCATCATCACCACTGC
GCCGTCGCGCGCGTATAAATATACGTCCGTACAGTACACATATCACTTAT
ATAGAGCATCAGTTCGTGTGACAGTGAGGTGACGCGAAGAGCGAGCGCGA
TGATTTGCGATATATGTCATCTCAGAGCGCTGGACGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_p14.b1 MSMg01no494_p14.b1 CHROMAT_FILE:
MSMg01no494_p14.b1 PHD_FILE: MSMg01no494_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:56 2005
         (695 letters)



>mm_chr3_4756822_4757916
          Length = 1095

 Score = 1323 bits (684), Expect = 0.0
 Identities = 690/692 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatgaaaagtgaatgcagtatgcataatttgtgctttgttatgttgtcagtatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgaaaagtgaatgcagtatgcataatttgtgctttgttatgttgtcagtatt 263

                                                                       
Query: 64  atggctgtgactcaccatttaaatataaaaatgaaaatttgtttgagactctatggttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggctgtgactcaccatttaaatataaaaatgaaaatttgtttgagactctatggttta 323

                                                                       
Query: 124 tctaaagctagtgagatagtttctaactatattgaattcagtaaactgagtaataagaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctaaagctagtgagatagtttctaactatattgaattcagtaaactgagtaataagaac 383

                                                                       
Query: 184 atctacacaattactcaaaagtaaaacatagttaatgccacaaaactggcattctctgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atctacacaattactcaaaagtaaaacatagttaatgccacaaaactggcattctctgta 443

                                                                       
Query: 244 tcagcaaacactgctgactacatatggtcttcttagttgccttgcagaggaactgtctgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagcaaacactgctgactacatatggtcttcttagttgccttgcagaggaactgtctgc 503

                                                                       
Query: 304 ttttcgaagctgttgagaggagcatgccaaagaataaattgtggttggaatactttttcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttcgaagctgttgagaggagcatgccaaagaataaattgtggttggaatactttttcc 563

                                                                       
Query: 364 cttctaaagttctgtgtataaagcatccaaacatatttgaatcatcatggtaatttgaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttctaaagttctgtgtataaagcatccaaacatatttgaatcatcatggtaatttgaga 623

                                                                       
Query: 424 aggaaaggtaggcaacattgtaatttagtgatttttttttcaagtgaaatttttgcatta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggaaaggtaggcaacattgtaatttagtgatttttttttcaagtgaaatttttgcatta 683

                                                                       
Query: 484 gcatttggacttacctcagcagtgtttcatatgatgctatgatttcattttcattgaaag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcatttggacttacctcagcagtgtttcatatgatgctatgatttcattttcattgaaag 743

                                                                       
Query: 544 gatgagtaatttggcttcattctgggagaattagccagggcatttttgtaggattagagc 603
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 gatgagtaatttggcttcattctgggagaattagccagggcatttttataggattagagc 803

                                                                       
Query: 604 atttctctagctatgtataaatttgttacatcaggaaaactagtcctaaaattagcatca 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atttctctagctatgtataaatttgttacatcaggaaaactagtcctaaaattagcatca 863

                                           
Query: 664 tatatatgactaccttagcatcaaacattttg 695
           || |||||||||||||||||||||||||||||
Sbjct: 864 taaatatgactaccttagcatcaaacattttg 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)