Query= MSMg01no495_c19.b1 MSMg01no495_c19.b1 CHROMAT_FILE:
MSMg01no495_c19.b1 PHD_FILE: MSMg01no495_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:11 2005
(573 letters)
>mm_chr3_139059064_139060036
Length = 973
Score = 586 bits (303), Expect = e-171
Identities = 321/327 (98%)
Strand = Plus / Minus
Query: 247 ctccctaatttcttctccatgttctctcaattctccctactttcttctccatgttctctc 306
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctccctactttcttctccatgttctctcaattctccctactttcttctccatgttctctc 714
Query: 307 aattctccctactttcttctccatgttctctcaattctccctactttcttctccatgttc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aattctccctactttcttctccatgttctctcaattctccctactttcttctccatgttc 654
Query: 367 tctcaattaagagcttctgaaatgcctttcgaatgcatccctgagattctgtgttttctc 426
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 653 tctcaattaagagcttctgaaatgccttttgaatgcatccctgagattctgtgttttctc 594
Query: 427 ctaatgtttctattgcatttacaacggattatctcttcagcacatcttcagaaattctct 486
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 593 ctaatgtttctattgcatttacagcgggttatctcttcagcacatcttcagaaattctct 534
Query: 487 caggtttcttccagtacatttgtcactttatcagtttagttattaacaaaacatgatgcc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caggtttcttccagtacatttgtcactttatcagtttagttattaacaaaacatgatgcc 474
Query: 547 tgaaaaattttagcactttccctgaca 573
||||| ||||||||||||||||||||
Sbjct: 473 tgaaagtttttagcactttccctgaca 447
Score = 321 bits (166), Expect = 8e-92
Identities = 175/178 (98%)
Strand = Plus / Minus
Query: 5 gaattcacacttttcacttgtattggtgggaaaaaaatctcagccatgacctccctactt 64
|||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct: 823 gaattcacacttttcacttgtattggtgggaaaaaagtcccagccacgacctccctactt 764
Query: 65 tcttctccatgttctctcaattctccctactttcttctccatgttctctcaattctccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcttctccatgttctctcaattctccctactttcttctccatgttctctcaattctccct 704
Query: 125 actttcttctccatgttctctcaattctccctactttcttctccatgttctctcaatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 actttcttctccatgttctctcaattctccctactttcttctccatgttctctcaatt 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_c19.g1 MSMg01no495_c19.g1 CHROMAT_FILE:
MSMg01no495_c19.g1 PHD_FILE: MSMg01no495_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:12 2005
(654 letters)
>mm_chr3_139009230_139010285
Length = 1056
Score = 1004 bits (519), Expect = 0.0
Identities = 621/655 (94%), Gaps = 6/655 (0%)
Strand = Plus / Plus
Query: 1 attaggccctgagatttgtagttggcagatttttgatgacattttccatttcattggaat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaggccctgaggtttgtagttggcagatttttgatgacattttccatttcattggaat 260
Query: 61 tattggagaatttattgttcctttcatctcgatttaactttcgtggtaagattgtcaagg 120
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 261 tattggagaatttattgttcctttcatcttgatttaactttggtggtaagattgtcaagg 320
Query: 121 agtccatcctctctctttttaataatttctggtttgttgggacaaagg-tttagaaagta 179
||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||
Sbjct: 321 agtccatcctctctcttttcaataatttctcgtttgttgggacaaaggcttt-gaaagta 379
Query: 180 tgtccttattaaaatttgaatatctttagtgttagtttaatatctctttccatcaataat 239
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 380 tgtccttattaaattttgaatatctttagtgttagtttaatatctcttttcatcaattat 439
Query: 240 tttcttaatttctgttaaaggatatccatattt-caacaccaactattccaatctgaatt 298
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 440 tttcttaatttctgttaaaggacatccatattttcaacaccaactattccaatctgaatt 499
Query: 299 gctgttcaataaaagacatttt-gatacattttgtatcctcattgctcattgctcttcat 357
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 500 gctgttcaataaaagacatttttgatacattttatatcctcattgctcattgctcttcat 559
Query: 358 tctcacattcctttttttacatttaattttattagatattttctttattacatttcaaat 417
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 560 tctcaaattcttttttttacatttaattttattagatattttctttattatattccaaat 619
Query: 418 gctatccctaaagttccctataccctcccccccaccatgctcccttacccacccactccc 477
||||||||||||||||||||||||||||||| | || ||||||| |||||||||| ||||
Sbjct: 620 gctatccctaaagttccctataccctcccccgc-cc-tgctcccctacccacccaatccc 677
Query: 478 aattcttggccctggagttcccctatattggggcatataaagtttgcaggcccaaggggc 537
| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 678 acttcttggccctggagttcccctatactggggcatataaaatttgcaggaccaaggggc 737
Query: 538 ctctcttcccaatgatggccgactaggccatcttctgctacataggcagctagagacatg 597
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 738 ctcttttcccaatgatggccgactaggccatcttctgctacatatgcagctagagacacg 797
Query: 598 agctcggggggtactgattagtccatattgttgttacacctatagggttgcagac 652
||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct: 798 agctctgggggtactggttagttcatattgttgttccacctatagggttgcagac 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1056
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1046
Effective search space: 673624
Effective search space used: 673624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
