NNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTTCTTTTTTCATTCCTTCCTTGACCAAGGTATCATTGAGAA
GAGTGTTGTTTAGTTTCCACGTGTTGGCTTTCTATTATTTATTTTGTTAT
TGAAGATCAGCCTTAGTCCATGGTGATCTGATAGGATACATGAGAAAATT
TCAATATTTTTGTATCTGTGGAAGCCTGTTTTGTGACCAATTATATGGTC
AGTTTTGGAGAAGGTACCATGAGGAGCTGAGAAGAAGGTATATCCTTTTG
TTTTAGGATAAAATGTTCTGTAGATATCTGTTAAATCCATTTGTTTTATA
ACTTCTGTTAGTTTCACTGTGTCCCTGTTTAGTTTCTGTTTCGAAGATCT
GTCAATTGATGAAAGTGGTGTGTTGAAATCTCCCAATATTATTGTGTGAG
GTGCACTGTGTGCTTTGAGTTTTACTAAAGTTTCTTTAATGAATGTGGCT
ACTCCTGCATTTGGAGCATATATATTCAGAATTGAGAGTTCCTCTTGGAG
GATTTTACTTTGATGAGTATGAAGTGTCCCTCCTTGTCTTTTTTGATAAT
TTTGGGTTGAAAGTCGATTTTATTTGATATTAGAATGGCTACTCCAGCTT
GTTTCTTCAGATCATTTGCTTGGAATATTGTTTTCCAACCTTTCATTTTG
ATGTAATGTCTGTCTTTTTCTCTGAGATGGGTTTTCTGTA

NTTGTTCCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGCCCCAGTTCCAAAC
ACAAGAAACATTTTCCTGACTTACTCTGTATGTTCTACTTCTCCTTCTTA
GCTTGCCCATAGCTTGCAGAAACCTGTATGCCTCAACAAATATATGCTTT
TTCTGTTTTTTTTTAAGATTTATTTATTTTATGTATATCAGTGCACTGTA
GCTGTCTTCACTCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTG
AGCCACTATGTGGTTGCTGGGATTTGAACTCATGACCTCTGGAAGAGCAC
TTAGTGCTCTTAACTGCTGAGCCATCCTTAATACCTAAGATATTTTAATG
TTTATTTATTTTATTTTATTAGGTATTAACAGTTTTCAACTTATTCCAGT
CAGTTGTCTTAAGGTAGGCAGCAAAATACTAACCATTTGACATTGTTTCA
AATCCATTATTTTTAAAGATAAAACTTACATAAATTTTGATAGATGTAAT
TGCAACTCATGATATTTAAAATTATAGTCTCCACAGGTGCCTTCACTACA
AAAAGAGTGCAGTGGACTGCAAATTCAGAAGAAGTGCATTTGGTGTATGT
GTGTGTGTGTGGGNNGGGGGGGGTTNNNNNNNNNNNNNNNNNNGNNNNNT
NNNTNNNTNTNNNNNNNNNNNNTTNTTGTTNTTTTNNNTTTTTTGTTNGN
T

Query= MSMg01no496_d01.g1 MSMg01no496_d01.g1 CHROMAT_FILE:
MSMg01no496_d01.g1 PHD_FILE: MSMg01no496_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:26 2005
         (598 letters)



>mm_chr3_23808531_23809528
          Length = 998

 Score = 1060 bits (548), Expect = 0.0
 Identities = 581/594 (97%), Gaps = 6/594 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgccccagttccaaacacaagaaacattttcctgacttactctgtatgttctacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 198 ctgtgccccagttccaaacacaagaaacattttcctgacttactctgtatgttatacttc 257

                                                                       
Query: 61  tccttcttagcttgcccatagcttgcagaaacctgtatgcctcaacaaatatatgctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 258 tccttcttagcttgcccatagcttgcagaaacctgtatgcctcaacaaatataagctttt 317

                                                                       
Query: 121 tctgttttttttt---aagatttatttattttatgtatatcagtgcactgtagctgtctt 177
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctgttttttttttttaagatttatttattttatgtatatcagtgcactgtagctgtctt 377

                                                                       
Query: 178 cactccagaagagggcatcagatctcattatggatggttgtgagccactatgtggttgct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cactccagaagagggcatcagatctcattatggatggttgtgagccactatgtggttgct 437

                                                                       
Query: 238 gggatttgaactcatgacctctggaagagcacttagtgctcttaactgctgagccatcct 297
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 438 gggatttgaactcatgacctctggaagagcacttagtgctcttgactgctgagccatcct 497

                                                                       
Query: 298 taatacctaagatattttaatgtttatttattttattttattaggtattaacagttttca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taatacctaagatattttaatgtttatttattttattttattaggtattaacagttttca 557

                                                                       
Query: 358 acttattccagtcagttgtcttaaggtaggcagcaaaatactaaccatttgacattgttt 417
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 558 atttattccagtcagttgtcttaaggtaggcagcaaaaaactaaccatttgacattgttt 617

                                                                       
Query: 418 caaatccattatttttaaagataaaacttacataaattttgatagatgtaattgcaactc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caaatccattatttttaaagataaaacttacataaattttgatagatgtaattgcaactc 677

                                                                       
Query: 478 atgatatttaaaattatagtctccacaggtgccttcactacaaaaagagtgcagtggact 537
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 678 atgatatttacaattatagtctccacaggtgccttcactacaaaaagagtgcagtggatt 737

                                                                 
Query: 538 gcaaattcagaagaagtgcatttggtgtatgtgtgtgtgtgtg-ggnngggggg 590
           ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||
Sbjct: 738 gcaaattcagaagaagtgcatttggtgtatgtgtgtgtgtgtgtgg--gggggg 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)