Query= MSMg01no496_i04.b1 MSMg01no496_i04.b1 CHROMAT_FILE:
MSMg01no496_i04.b1 PHD_FILE: MSMg01no496_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:52 2005
(671 letters)
>mm_chr3_156720577_156721647
Length = 1071
Score = 1205 bits (623), Expect = 0.0
Identities = 656/667 (98%)
Strand = Plus / Plus
Query: 5 gaattcaggttctcttatctaggcaaaccatgaagggcagagtacatcactcacatagag 64
||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggttgtattatctaggcagaccatgaagggcagagtacatcactcacatagag 264
Query: 65 cccagggtcacaaagctaattcagcaggacggtaccatgaggcaacagatactggcatgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccagggtcacaaagctaattcagcaggacggtaccatgaggcaacagatactggcatgg 324
Query: 125 gttgtaattcatgtcgcctctacagaacttctaaagcatggttagccaaaaatcaatttg 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgtaattcatgtcgcctctatagaacttctaaagcatggttagccaaaaatcaatttg 384
Query: 185 aatactaaaaatgccctccctgccagtgggactaacgggactgaggcaggggagctatgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatactaaaaatgccctccctgccagtgggactaacgggactgaggcaggggagctatgt 444
Query: 245 gatgaactcttcatcctcaccaacatttgaagtcctaacccttcccatttaggatgttag 304
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 gatgaactcttcattctcaccaacatttgaagtcctaacccttcccatgtaggatgttag 504
Query: 305 tgggtatgcagtggtgtctctataatctttgtctgattaaaattacctttgaagtgagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggtatgcagtggtgtctctataatctttgtctgattaaaattacctttgaagtgagtg 564
Query: 365 tgtttgtggctttcaacaaaggtacagttacacacccacctttctaatggaaacacttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttgtggctttcaacaaaggtacagttacacacccacctttctaatggaaacacttga 624
Query: 425 gtattgctgtcagaaaattgcctcatgatgtcctgttctagtgtcaatgagcctactctg 484
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgttgctgtcagaaaattgcctcatgatgtcctgttctagtgtcaatgagcctactctg 684
Query: 485 atacttttctaatttccaaaattttatgtaaatgaagtgatataatatgtagctcactaa 544
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 685 atacttttctaatttccaaaatgttatgtaaatgaagtgatataatatgtagctcactga 744
Query: 545 tctctgcattgtgccagttgtgatttttagttgctgtaaataaaggctgctttggtgagg 604
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctctgcattgtgctggttgtgatttttagttgctgtaaataaaggctgctttggtgagg 804
Query: 605 ggtagtaactacacttctccatgggcatgaagataaaatttggaatgtagtaaaaaatta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggtagtaactacacttctccatgggcatgaagataaaatttggaatgtagtaaaaaatta 864
Query: 665 tgctggt 671
|||||||
Sbjct: 865 tgctggt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_i04.g1 MSMg01no496_i04.g1 CHROMAT_FILE:
MSMg01no496_i04.g1 PHD_FILE: MSMg01no496_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:52 2005
(540 letters)
>mm_chr3_156788853_156789793
Length = 941
Score = 509 bits (263), Expect = e-148
Identities = 418/549 (76%), Gaps = 124/549 (22%)
Strand = Plus / Minus
Query: 1 catgtgacaagaaaaaacaaaaacaaaaaaccaaactcttgaa-------agtctctacc 53
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 536 catgtgacaagaaaaaacaaaaacaaaaaaccaaactcttgaaaatttagagtctctacc 477
Query: 54 agggtaaagattaatcacagcttgagcgac-tgatccactgacaggaagtatcagtcagg 112
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 476 agggtaaagattaatcacagcttgagcgacttgatccactgacaggaagtatcagtcagg 417
Query: 113 cattgacatcaaaagcaagcacttcggctgtgaaaggcaggtcataaagtccataggtca 172
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cactgacatcaaaagcaagcacttcggctgtgaaaggcaggtcataaagtccataggtca 357
Query: 173 gaatggctatttcctaagaaatatcaccaaatgatattttccagacacttagggtccatt 232
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 356 gaatggctatttcctaagaaatatcaccaaataatattttctagacacttagggtccatt 297
Query: 233 ttgatgca-tctttacaaaaaacccacacttttttgagtattcatgcaatcaggcatttt 291
|||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 296 ttgatgcagt-tttacgaaaaacccacactcttttgagtattcatgcaatcaggcatt-- 240
Query: 292 ttaaattaggtatttagctcatttacatttttacatttccaatgctataccaaaagtccc 351
Sbjct: 240 ------------------------------------------------------------ 240
Query: 352 ccatacccacccacccccactcccctacccacccactcccccttttcaggcatttttttt 411
||||||||
Sbjct: 239 ----------------------------------------------------tttttttt 232
Query: 412 aacttgcaaaatggtcattttcatagctgaatgctgctcagtgaaaacaactaatagaat 471
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 231 aacttgcaaaatggtcattttcatagctgaatgctgctcagtgaaaacaattaatagaat 172
Query: 472 cagcaaagtatgtatctgaaaggagcacatttggtgacaagctaggtggtgttataagtg 531
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 171 cagcaaagtatgtatctgaaaggaacacatttggtgacaagctaggtggtgttataagtg 112
Query: 532 ttcttggtg 540
|||||||||
Sbjct: 111 ttcttggtg 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
