NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCCGCGGAATTCAAAACTCCGATCATTCAGGAAAAAAAATTCAGCAACA
GTAAAACAGACTAAAATCTGTCACCCAACACACCCTGGCTCATCTTTCAA
CTGGAGAGAAGTCATCAAGAAAAGAAAAGTTAAGCGAAGTGGGATTTCTA
TGTAGATGGATCACAAAAGAAAAAGTCAGGGATGAGCAAAACAAACATGG
AGTGTGATCAGGTCTAGACACACATTCTCTCCGTGCTCAGCCCAGCTACG
CTGAGCTGAGCACCAGGACACTGTTTTTTGACTGGTGTATCTGAACAGGG
CACACTGTGCACAAGGGTGGGGGTTTTGAGTGTTTTGAGACCAGTAGCTC
AAACAAGAAGACACTGAACCCACCCTTTTCACCCCTGTAATTATGCCAGT
CCCTGAAATGAATTCTTGGGTAACTTAATAAGTGCGGCAAGAGTAGAAAT
AATCAACTTTAAAAAGAAGACTCATTCAGAAGGCTTAGATTACGCAAATT
TTCTTTATACAGTGTAGGTTGCAATAACCCTGGTGTTTGATGGGATCTGA
GCTATTCTGGTAAACCCAATGGTGGCAGGGAAGTAAATTCAGTCAGCAAA
GAGAACATATCCTGAGCAGAGCATCCATGCCCATCTCAGCCATTGCTTAA
GCATAGACGGTGTATGCAAAGCTAAGCTACCACACCTGGGGGTT

TAACTTAACGATGAAAATTCGCGGCTTCCTTCTCCATAATGGATCCCCTC
ATATCACAGCGGACATCTCCTTAAAAAGAAATACAACTATCCATCTATTT
TCATAAAAAATCTAGCACCGGCCCACTCCTTCTGTACCCGCTCCCCTCTC
TCCTCTCTCCTGGTTAGCCGCGTATTGGGTTTCAAAGCGTCTTGTGTCGG
CTTCTTTCGTTTGACATTTGTAGGATGAAACGCTACGGGCGTGTATTTCG
TACTACGTTTCTTCTTTATCGAACAACCCCATAGATGTCATAATCGACTC
TATGTGTCGTATGTCCATTACATCACTTACTGATTATTTTCTATATTTGA
ACGCTCTCCGCGTTAATATTGACTTCTACTACTGATCTTCTTCGGTGGCG
GATAAATGGTTACTGCGTGCTATATCCTGATTATCAGCTACCTCCGTATA
TGATTTATCTTTTTTCCCTATTCTGGATCGCAATATTACTTCCCCCTATA
TTTCTCTGGTTCTCTTCGACTGAGTCTCTTCTGTGTTGATTCTCGAGTTT
GCCGGGCTTTCTTCTTTCCTTCGTCTATCCTGTATATCTTAATTTTATTA
ACATTAATTTTCGCCTCCTACACCCATAGATCGCAGAAATCACACTTCGT
GTTTTCGGTCCCGCGCGTTCCGCTTACGCCACCCGGTCGCCTCCTCCCCT
TTTCTTTCCCCCCCACCACAGGCCGTAAATTANGTATCTGGTTCGTTGCT
AAAACG

Query= MSMg01no496_n08.b1 MSMg01no496_n08.b1 CHROMAT_FILE:
MSMg01no496_n08.b1 PHD_FILE: MSMg01no496_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:18 2005
         (630 letters)



>mm_chr3_39808861_39809890
          Length = 1030

 Score = 1125 bits (582), Expect = 0.0
 Identities = 618/634 (97%), Gaps = 8/634 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaaaaaaattcagcaacagtaaaacagactaaaatctgtcacccaacacaccctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaaaaaaattcagcaacagtaaaacagactaaaatctgtcacccaacacaccctggct 260

                                                                       
Query: 61  catctttcaactggagagaagtcatcaagaaaagaaaagttaagcgaagtgggatttcta 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctttcaactggtgagaagtcatcaagaaaagaaaagttaagcgaagtgggatttcta 320

                                                                       
Query: 121 tgtagatggatcacaaaagaaaaagtcagggatgagcaaaacaaacatggagtgtgatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagatggatcacaaaagaaaaagtcagggatgagcaaaacaaacatggagtgtgatca 380

                                                                       
Query: 181 ggtctagacacacattctctccgtgctcagcccagctacgctgagctgagcaccaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctagacacacattctctccgtgctcagcccagctacgctgagctgagcaccaggaca 440

                                                                       
Query: 241 ctg----ttttttgactggtgtatctgaacagggcacactgtgcacaagggtgggggttt 296
           |||    |     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccccta----gactggtgtatctgaacagggcacactgtgcacaagggtgggggttt 496

                                                                       
Query: 297 tgagtgttttgagaccagtagctcaaacaagaagacactgaacccacccttttcacccct 356
           ||||||||||||||||||||||||||||||||||||||||||   |  ||||||||||||
Sbjct: 497 tgagtgttttgagaccagtagctcaaacaagaagacactgaatttattcttttcacccct 556

                                                                       
Query: 357 gtaattatgccagtccctgaaatgaattcttgggtaacttaataagtgcggcaagagtag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtaattatgccagtccctgaaatgaattcttgggtaacttaataagtgcggcaagagtag 616

                                                                       
Query: 417 aaataatcaactttaaaaagaagactcattcagaaggcttagattacgcaaattttcttt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaataatcaactttaaaaagaagactcattcagaaggcttagattacgcaaattttcttt 676

                                                                       
Query: 477 atacagtgtaggttgcaataaccctggtgtttgatgggatctgagctattctggtaaacc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atacagtgtaggttgcaataaccctggtgtttgatgggatctgagctattctggtaaacc 736

                                                                       
Query: 537 caatggtggcagggaagtaaattcagtcagcaaagagaacatatcctgagcagagcatcc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 caatggtggcagggaagtaaattcagtcagcaaagagaacatatcctgagcagagcatcc 796

                                             
Query: 597 atgcccatctcagccattgcttaagcatagacgg 630
           ||||||||||||| ||||||||||||||||||||
Sbjct: 797 atgcccatctcagtcattgcttaagcatagacgg 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)