Query= MSMg01no496_p04.b1 MSMg01no496_p04.b1 CHROMAT_FILE:
MSMg01no496_p04.b1 PHD_FILE: MSMg01no496_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:27 2005
(615 letters)
>mm_chr3_89819630_89820645
Length = 1016
Score = 1062 bits (549), Expect = 0.0
Identities = 595/620 (95%), Gaps = 21/620 (3%)
Strand = Plus / Plus
Query: 5 cctaagnaaccctggcaaccataaagtaattcatctggacaccattttcataaagacgcc 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cctaagtaaccctggcaaccataaagtaattcatctggacaccattttcataaagacgcc 264
Query: 65 ctgcttcataccattttaaagacttatatttaagcatttcccaggctaagaacagacata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgcttcataccattttaaagacttatatttaagcatttcccaggctaagaacagacata 324
Query: 125 cttataccagttagagacacaattttttgtaggaattaatccagggccttatgtctgtta 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttataccagttaaagacacaattttttgtaggaattaatccagggccttatgtctgtta 384
Query: 185 gtgatgaactccatgactgagctataatatcttcttttttttt-gtttgtttttttt-gt 242
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 385 gtgatgaactccatgactgagctataatatcttcttttttttttgtttgtttttttttgt 444
Query: 243 ttgtttgttttgagataggatttctctgtgcagtcctgacactcactctgtagaccaggc 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 ttgtttgttttgagataggatttctctgtgcagtcctggcactcactctgtagaccaggc 504
Query: 303 tacaagagatctgcctgcttctgcatccaaaacccc------gccacctccattaaaaaa 356
|||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 505 tacaagagatctgcctgcttctgcatccaaaa----tattggg--acctccattaaaaaa 558
Query: 357 caaaaacaaaaacaaaaagtgtatgctgttctgcatttaacagagaacatgaagtccttg 416
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caaaaacaaaaa------gtgtatgctgttctgcatttaacagagaacatgaagtccttg 612
Query: 417 cctattttctgtgaaaaggaaaaacacttttaattatgctccattaagtaca-cttctgg 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 613 cctattttctgtgaaaaggaaaaacacttttaattatgctccattaagtacaacttctgg 672
Query: 476 actcttttgactttccaatatccctttactctttttcctacaaactcagttgagtcaaag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 actcttttgactttccaatatccctttactctttttcctacaaactcagttgagtcaaag 732
Query: 536 acaatttcaagaacatcctactgggtgagctaggtatgccaaatacatacctgtaatccc 595
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaaatttcaagaacatcctactgggtgagctaggtatgccaaatacatacctgtaatccc 792
Query: 596 aacactagagaggcagaggc 615
||||||||||||||||||||
Sbjct: 793 aacactagagaggcagaggc 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_p04.g1 MSMg01no496_p04.g1 CHROMAT_FILE:
MSMg01no496_p04.g1 PHD_FILE: MSMg01no496_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:27 2005
(644 letters)
>mm_chr3_89825844_89826887
Length = 1044
Score = 569 bits (294), Expect = e-166
Identities = 310/320 (96%), Gaps = 10/320 (3%)
Strand = Plus / Minus
Query: 335 aattattc-ttgatttctcttcagtttgatggccgtggccatcttagaattttgtacttt 393
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 aattattctttgatttctcttcagtttgatggccgtggccatcttagaattttgtacttt 985
Query: 394 aaatatggataatttagctcttaagctcttacctttcttactcatctctagccctccttc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 aaatatggataatttagctcttaagctcttacctttcttactcatctctagccctccttc 925
Query: 454 tctctctctccatgtggccatagctggcctctttgtttctaccttctttctccctgcctt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tctctctctccatgtggccatagctggcctctttgtttctaccttctttctccctgcctt 865
Query: 514 tccaaaataaagctct-aaaaccattttttaaaaaatgaataatttatggatatgtgaca 572
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tccaaaataaagctctaaaaaccattttttaaaaaatgaataatttatggatatgtgaca 805
Query: 573 tatacaggcaggtcagtggtattgatttttctggtttctggtttcc--------tttttt 624
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 804 tatacaggcaggtcagtggtattgatttttctggtttctggtttcctttttttttttttt 745
Query: 625 ttttttggttttttgagaca 644
||||||||||||||||||||
Sbjct: 744 ttttttggttttttgagaca 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
