Query= MSMg01no497_c08.b1 MSMg01no497_c08.b1 CHROMAT_FILE:
MSMg01no497_c08.b1 PHD_FILE: MSMg01no497_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:43 2005
(690 letters)
>mm_chr3_152719603_152720692
Length = 1090
Score = 1288 bits (666), Expect = 0.0
Identities = 681/686 (99%)
Strand = Plus / Plus
Query: 5 gaattccacattttttctctctgctaaggatagggaatggaccatgtagtaacctggagc 64
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacattttttgtctctgccaaggatagggaatggaccatgtagtaacctggagc 264
Query: 65 ctgccaactcccagttccaagttgaagtaactgtctggaactggttagaaacccgggaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgccaactcccagttccaagttgaagtaactgtctggaactggttagaaacccgggaag 324
Query: 125 gcacagccctgggagagaaggaaggcacgggcagctccctttccagtcatcttcccacct 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 gcacagccctgggagagaaggaaggcatgggcagctccctttccagtcatcttcccacct 384
Query: 185 cttgtctcttcacatctaacactgagcatttgatggcttatggattcctaagaaggtgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgtctcttcacatctaacactgagcatttgatggcttatggattcctaagaaggtgag 444
Query: 245 aattgaatcaagtcttagtgctatttggtttagatcagagcactattatagaaacactca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgaatcaagtcttagtgctatttggtttagatcagagcactattatagaaacactca 504
Query: 305 agagatattaataatcaagatgaattgtgttgctaccacaggatacctaataaaatcttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagatattaataatcaagatgaattgtgttgctaccacaggatacctaataaaatcttc 564
Query: 365 agttcttcagactatcagttgacagtatcagaacactggacagtgtggtgtgggcagata 424
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aattcttcagactatcagttgacagtatcagaacactggacagtgtggtgtgggcagata 624
Query: 425 ggaggagaccagagatttgtcttcatttgggattttatagcagtagtgggtctttcattc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaggagaccagagatttgtcttcatttgggattttatagcagtagtgggtctttcattc 684
Query: 485 actaccgttctttgtttattctcccatttcaaatgatactgatttaaaaaaaattgacca 544
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actaccattctttgtttattctcccatttcaaatgatactgatttaaaaaaaattgacca 744
Query: 545 cactacactctgaataaagcactgttacatgtaaaatgtctcacttaagagagaaagcca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cactacactctgaataaagcactgttacatgtaaaatgtctcacttaagagagaaagcca 804
Query: 605 gtatgacgaacctggatccaggcctgggattcatacacatccagatttaaatctcccttg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtatgacgaacctggatccaggcctgggattcatacacatccagatttaaatctcccttg 864
Query: 665 agccatgtaccatttgtgggcacaat 690
||||||||||||||||||||||||||
Sbjct: 865 agccatgtaccatttgtgggcacaat 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_c08.g1 MSMg01no497_c08.g1 CHROMAT_FILE:
MSMg01no497_c08.g1 PHD_FILE: MSMg01no497_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:43 2005
(663 letters)
>mm_chr3_152884228_152885290
Length = 1063
Score = 416 bits (215), Expect = e-120
Identities = 246/265 (92%), Gaps = 14/265 (5%)
Strand = Plus / Minus
Query: 1 actgtgtagtagaggctggctttagacccttcattccctcgcctccacttctgaaaggct 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 373 actgtgtagtagaggctggctttagacccttcattccctcgcctccacctctgaaacgct 314
Query: 61 gggatgatggttatgtagtcttgtgcacagtcactcaagtagtttaatgaatgcaagtcc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggatgatggttatgtagccttgtgcacagtcactcaagtagtttaatgaatgcaagtcc 254
Query: 121 attaactttgactaaatccaggcaggcttctgggtccctggactagaactc--------- 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attaactttgactaaatccaggcaggcttctgggtccctggactagaactctggaccaca 194
Query: 172 -----tgctttctgatgctaatgatactccattgtttggaaggaagctgtttgtgacata 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gctcatgctttctgatgctaatgatactccattgtttggaaggaagctgtttgtgacata 134
Query: 227 tagtgtcaggcatgatgtgcataga 251
||||||||||||||| | |||||||
Sbjct: 133 tagtgtcaggcatgaggggcataga 109
Score = 107 bits (55), Expect = 4e-27
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 609 catagagcctcttctttaggtcagagacagaaattcttaatgccgaaattcccag 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 catagagcctcttctttaggtcagagacagaaattcttaatgccgaaattcccag 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
