BAC Information

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BAC

Clone NameMSMg01-497L01
Chromosome3 (Build37)
Map Location 89,745,612 - 89,746,153
singlet/doubletsinglet
Overlap geneAtp8b2
Upstream geneDap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
Downstream geneLOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497L01.T7 (MSMg01no497_l01.b1)MSMg01-497L01.TJ (MSMg01no497_l01.g1)
ACCAG574196AG574197
length756749
length of high quality
(start - end)		647 (49 - 695)587 (80 - 666)
definitionCHROMAT_FILE: MSMg01no497_l01.b1 PHD_FILE: MSMg01no497_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:28 2005CHROMAT_FILE: MSMg01no497_l01.g1 PHD_FILE: MSMg01no497_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAGATTCTAGAAACTGCAGCCAGCAGCCTAGATTGAGTTT
AAAGAAGAGAAAGGAGTGAGTGGGGCACTGTAGTTCTGGGCTAGCGAGTG
CTACTGTAGTGTTTCTACTGTAGTGCTGCTACTGTAGTGCTGCGACTGTA
GTGCTTCTACTGTAGTGCTTCTACTGTAGTGCTTCTACTGTAGTGCTTCT
ACTGTAGTGCTTCTACTGTAGTGCTGCTACTGTAGTGCTTCACTACCTGG
AAAAGGCAGGCACACAGTATGTTTGGGGTAGAGGAGACGGTCCATCACAT
GGGCCTTTTTAGCCTGGAGATTCCTTGACTGAGATGGTTAAAGAAACAGG
ACTAGGGTTTCAGGAGAGAGTTGGAGAGCAGAGACAGATTTGGAGATTAG
CATTTGAGTGGCAGACAGACAGAAGTTGAGGGTGTGTGGGGTTTGAGTTT
GAGGACATGGAACTATGAGAAATAGCAATGGTGAAGCGAGGAGATCCCCA
CTGTCAACTTCCTGACTCCTGTCCTTCAGGGAATGCCCAGAACACCCTGG
CCCAGCCCACCGTGTGGCTCACCATCGCGCTCACCACGGCTGTCTGCATC
ATGCCTGTGGNTGCCTTCCGCTTCCTCAGGCTTAGCCTGAAGCCGGATCT
CTCCGACACGGTGAGAAGCCTGTGCAGGCTGGCCGCAAGCCTTGGGGGGC
ACCTGC

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGAATTCAGTAAGAAGG
TTACCTATTCTGTAACATTCAAATTTACTCCTAGTAGAGATGGTGAAACT
AATTAGGCATTACAAAGAACAGAGCTAGAATAGCTCCAGGGCTGGTCTGC
AGGGTGATTACTTAGGACAGTAGCCAGTCTCATCCAGACAAGGGAATACA
CAATGGCCTAGCTAATAGGTGGGTTTAACATGTAAGAGTTAGGGACTCCC
ACTGAGACAGGAATCTTCACTACAGCCAGGTATAGCAGGCTACACTGCAT
GTTAGAAGCAAGTTGGTGAATTCTTCTGACAAATGGAGATTCTCCACAGA
TACTTAAAACAACAGCCAAGTTAAACTGATACAAGAATTTATCAAGGCCT
AGGAAATAGGGGGGTTGTGATATTGCATTATTCATGAGAAGGTCTGCTAT
AGCAGAACCCCCTGGTGCTAGCTTTCACAAGGCTCAAAGGAGTAGCACAA
ATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGCTGACCCTAGACA
GGGCTGTTTTATCTTTACTGTAAACATTACCTGGTTCCTGGAAGTCCTTT
TGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTGCTTTGCCTG
CTGTGACATCCTACCCCTTTGTTTTCTGGATTAATAAGACTGGTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_l01.b1 MSMg01no497_l01.b1 CHROMAT_FILE:
MSMg01no497_l01.b1 PHD_FILE: MSMg01no497_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:28 2005
         (647 letters)



>mm_chr3_89745178_89746224
          Length = 1047

 Score =  959 bits (496), Expect = 0.0
 Identities = 531/543 (97%), Gaps = 2/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 106 ctgtagtgtttctactgtagtgctgctactgtagtgctgcgactgtagtgcttctactgt 165
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 976 ctgtagtgcttctactgtagtgctgctactgtagtgctgtgactgtagtgcttctactgt 917

                                                                       
Query: 166 agtgcttctactgtagtgcttctactgtagtgct-tctactgtagtgcttctactgtagt 224
           ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 916 agtgcttctgctgtagtgcttctactgtagtgctgt-tactgtagtgcttctactgtagt 858

                                                                       
Query: 225 gctgctactgtagtgcttcactacctggaaaaggcaggcacacagtatgtttggggtaga 284
           ||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct: 857 gctgctactgtagtgcttcgctacctggaaaaggcaggcacacagcaggcttggggtaga 798

                                                                       
Query: 285 ggagacggtccatcacatgggcctttttagcctggagattccttgactgagatggttaaa 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggagacggtccatcacatgggcctttttagcctggagattccttgactgagatggttaaa 738

                                                                       
Query: 345 gaaacaggactagggtttcaggagagagttggagagcagagacagatttggagattagca 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaaacaggactagggtttcaggagagagttggagagcagagacagatttggagattagca 678

                                                                       
Query: 405 tttgagtggcagacagacagaagttgagggtgtgtggggtttgagtttgaggacatggaa 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttgagtggcagacagacagaagttgagggtgtgtggggtttgagtttgaggacatggaa 618

                                                                       
Query: 465 ctatgagaaatagcaatggtgaagcgaggagatccccactgtcaacttcctgactcctgt 524
           | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccatgagaaatagcaatggggaagcgaggagatccccactgtcaacttcctgactcctgt 558

                                                                       
Query: 525 ccttcagggaatgcccagaacaccctggcccagcccaccgtgtggctcaccatcgcgctc 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccttcagggaatgcccagaacaccctggcccagcccaccgtgtggctcaccatcgcgctc 498

                                                                       
Query: 585 accacggctgtctgcatcatgcctgtggntgccttccgcttcctcaggcttagcctgaag 644
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 accacggctgtctgcatcatgcctgtggttgccttccgcttcctcaggcttagcctgaag 438

              
Query: 645 ccg 647
           |||
Sbjct: 437 ccg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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