Query= MSMg01no497_n08.b1 MSMg01no497_n08.b1 CHROMAT_FILE:
MSMg01no497_n08.b1 PHD_FILE: MSMg01no497_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:39 2005
(569 letters)
>mm_chr3_23564381_23565350
Length = 970
Score = 944 bits (488), Expect = 0.0
Identities = 546/566 (96%), Gaps = 3/566 (0%)
Strand = Plus / Minus
Query: 1 tctaacactggacagagaaaccaagtttgttgctgaatgttcatcatttgttcaagcatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 765 tctaacactggacagagaaaccaagtttgttgctgaatgttcatcattagttcaatcatt 706
Query: 61 gaaagggtgaagctttatggggaaacaaagcagcacagcataaagatggagatgatgggc 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaaagggtgaagcttt-tggggaaacaaagcagcacagcataaagatggagatgatgggc 647
Query: 121 caaggtgagtggcagcttcaggaccattctctcattgccaaaaggaggcctggcttatgt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 646 tgaggtgagtggcagcttcaggaccattctctcattgccaaaaggagccctggcttaggt 587
Query: 181 gaggattaagggaacagagtaatgtaggatcaacccacagtttctgatatcagccattgg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 586 gaggattaagggaacagagtaatgtaggatcgacccacagtttctgatatcagccattgg 527
Query: 241 gtattattttattctatagtcctggatttctcattaagtaattacagagattgaatctac 300
|||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtattaattaattctatagttctggatttctcattaagtaattacagagattgaatctac 467
Query: 301 ccggaaaagaccacaaacttattcaaattataattacgtgaatttattaacaattgctag 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 466 ccggaaaagaccacaaacttattcaaattataattatgtgaatttattaacaatagctag 407
Query: 361 caggctggcagccttaacacaccaaaccaaaggcatggtgtgcattagaggcaagaggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caggctggcagccttaacacaccaaaccaaaggcatggtgtgcattagaggcaagaggaa 347
Query: 421 gggtttttaagatgggccctacaaacatctcatttgtgtggaaggtatacctgac--tga 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 346 gggtttttaagatgggccccacaaacatctcatttgtgtggaaggtatacctgactgtga 287
Query: 479 cagtgcttttcctttcctgagctgggggctgttttgctcccctgtatacagctacaaagg 538
||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 286 cagtgctttaccttccctgagctgggggctgttttgctcccctgaatacagctacaaagg 227
Query: 539 agttatctcagtccttcctttctttt 564
||||||||||||||||||||||||||
Sbjct: 226 agttatctcagtccttcctttctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_n08.g1 MSMg01no497_n08.g1 CHROMAT_FILE:
MSMg01no497_n08.g1 PHD_FILE: MSMg01no497_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:39 2005
(564 letters)
>mm_chr3_23400408_23401375
Length = 968
Score = 870 bits (450), Expect = 0.0
Identities = 539/572 (94%), Gaps = 12/572 (2%)
Strand = Plus / Plus
Query: 1 ctccacggctgaggataagttcagtcgtttaaaaggcatattatttctatgcatctcttt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctccacggctgaggataagttcagtcgtttaaaaggcagattatttctatgcatctcttt 260
Query: 61 gtgctcatgaggtatgatgctttatctttaaaaagaaaatcatggtttttataatagtat 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctcatgaggtatgatgctttatcattaaaaagaaaatcatggtttttataatagtat 320
Query: 121 ttcaacatcagtactgttctccaaattatttt-ccaaatatgatgtgaatattatagaat 179
||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttcaacatctgtactgttcgccaaattattttcccaaatatgatgtgaatattatagaat 380
Query: 180 ttaagtgtaagataa---aatgttagt-cttttgttaatatatgattaaaattaacattt 235
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 381 ttaagtgtaagataaaataatgttagtac-tttgttaatatatgattaaaattaacattt 439
Query: 236 attcntttagtt---ttgtgaaatttatagtttatagtctttatgttagctaagcataca 292
||| |||| || ||||||||| | ||| ||||||||||||||||||||||||||| |
Sbjct: 440 att--ttta-ttgaattgtgaaatgtgtaggttatagtctttatgttagctaagcataga 496
Query: 293 agacaaaaacttagtttttgttgttattgttgctattacatgatttctttgcagaaaact 352
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 497 agacaaaaacttagtttttgttgttattattgctgttacatgatttctttgcagaaaact 556
Query: 353 catgagtggactttaaaaaaccatagctctgtgtgtgtctgcctgtttgtgtgtggggga 412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catgagtagactttaaaaaaccatagctctgtgtgtgtctgcctgtttgtgtgtggggga 616
Query: 413 gggcacatgtttgtgttaggtgtaattcttaattgctttctaccttaatttttgtggctg 472
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 gggcacatgtttatgttaagtgtaattcttaattgctttctactttaatttttgtggctg 676
Query: 473 ggtgcctcaatcaatctagaaatttcctattagtatcagtggaccagccaaggggcatca 532
|||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 677 ggtgcctcaatcaacctagaaatttcctattagtatcaatgggccagccaatgggcatca 736
Query: 533 tggacccttttgtctccatctccccagttctg 564
|| | | |||||||||||||||||||||||||
Sbjct: 737 tgaatctttttgtctccatctccccagttctg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 968
Length adjustment: 10
Effective length of query: 554
Effective length of database: 958
Effective search space: 530732
Effective search space used: 530732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
