Query= MSMg01no498_i04.b1 MSMg01no498_i04.b1 CHROMAT_FILE:
MSMg01no498_i04.b1 PHD_FILE: MSMg01no498_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:35 2005
(659 letters)
>mm_chr3_74794955_74796014
Length = 1060
Score = 1189 bits (615), Expect = 0.0
Identities = 650/667 (97%), Gaps = 12/667 (1%)
Strand = Plus / Plus
Query: 1 ttttaatgggtgctttttaaaaagcaagtaagagagctcagttgtggtttaagcatgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatgggtgctttttaaaaagcaagtaagagagctcagttgtggtttaagcatgagg 260
Query: 61 aagttaaattaaatcccaagcacccaaataagcagtaataggcagatttgtgccatatat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aagttaaattaaatcccaagcacccaaataagcagtaataggcagatttgtgccgtatat 320
Query: 121 gattgtgaacataatgcaagtcgggtggatatagaccattgggcctaattcagcagccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgtgaacataatgcaagtcgggtggatatagaccattgggcctaattcagcagccaa 380
Query: 181 ccaagcctagtcagtaagtcgcagggaaaggggagagattgagtcctctcaccccccccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagcctagtcagtaagtcgcagggaaaggggagagattgagtcctctcaccccccccc 440
Query: 241 -aaaa----aaagaattatagaaaagaaaaaacagagagagggaaaaaatagaacagctc 295
|||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaagaagaaagaa----agaaaagaaaaaacagagagagggaaaaaatagaacagctc 496
Query: 296 atgagaaaagtcacccaattatttctgtcctccacatgtgcctatgtaatctttatcatg 355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 atgagaaaagtcacccaattatttctgtcctccacatgtgcctatgtaatctctatcatg 556
Query: 356 aaaacttgcacccacatatccatataaaagtgacacttaccttggaaggcttgccctttt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaacttgcacccacatatccatataaaagtgacacttaccttggaaggcttgccctttt 616
Query: 416 cttttctttttttttt---aagaagatttatttattattatatatgagtagactgtagct 472
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttttctttttttttttttaagaagatttatttattattatatatgagtagactgtagct 676
Query: 473 gttttcagacacaccagaagagggtatcagatctcattgcagatggttgtgagtcaccat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gttttcagacacaccagaagagggtatcagatctcattgcagatggttgtgagtcaccat 736
Query: 533 gaggttgctgggttttgaattccggacctttggaagagcagtcagtgctcttaaccgctg 592
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 737 gaggttgctgggttttgaattccggacctttggaagagaagtcagtgctcttaaacgctg 796
Query: 593 agccatctctccagcccagcccttttctaaattgaaacaaaggatgactagattgagaac 652
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 797 agccatctctccagcccagcccttttctaaattgaaacaaaggaggactagattgagaac 856
Query: 653 aggaagc 659
|||||||
Sbjct: 857 aggaagc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_i04.g1 MSMg01no498_i04.g1 CHROMAT_FILE:
MSMg01no498_i04.g1 PHD_FILE: MSMg01no498_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:35 2005
(330 letters)
>mm_chr3_74947070_74947799
Length = 730
Score = 630 bits (326), Expect = 0.0
Identities = 329/330 (99%)
Strand = Plus / Minus
Query: 1 tgtctagctgcaagatttgattacaatggtggggcagctagaggaacttaggggctggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgtctagctgcaagatttgattacaatggtggggcagctagaggaacttaggggctggag 471
Query: 61 tattagaggatcttcagggctggatgtcaggtaagggggggcactgaggtatttagagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tattagaggatcttcagggctggatgtcaggtaagggggggcactgaggtatttagagtt 411
Query: 121 attaatgataaatggatagagagaaatactgagtagatttctgatatttagtggaggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 attaatgataaatggatagagagaaatactgagtagatttctgatatttagtggaggagg 351
Query: 181 aacctcgtgtacattgacaacatagagagagcagagatcttcggtggatgtgaattgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 350 aacctcgtgtacattgacaacatagagagagcagagatcttcggtggatgtgaattgttg 291
Query: 241 aatgatgacactgtaacagtgccctgagtaaagagtgcagatcctccccaccccaccgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aatgatgacactgtaacagtgccctgagtaaagagtgcagatcctccccaccccaccgca 231
Query: 301 ctgcagagagtgaaagggaggaaatcagga 330
||||||||||||||||||||||||||||||
Sbjct: 230 ctgcagagagtgaaagggaggaaatcagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
