NNNTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAATTTTTCGCAATCGTTTGAAATGATGCAGTCTCC
ACAAGGAGATGGAGTTCAAATGAGTGAGTTGTCTGCCCTTTGGGTAAGTG
ACCTCCAGGGTGATCCTAGTCCAGGAAGACTTTAAAGGACTGTCTAAGGT
CAGGTCTTCCTGGTGAGGAAAGATTTGTTTCCATAAAGTCTGTCATTCCA
CATCTGTTGGCTTGAATAACTTCCTGACTCAGGGAAGTTTCTCCTCTTTT
CTAGTTCTTTCTATCTTTACCAGAACTCTGATTTTGCACATTCCTAAGTA
CCTAAGATCTTTCTTTTGCCTTTTCCTTGTATGGTACCATGATTTTTCTC
TCTTTGTTAAATATATCTTCCATTCTATTAGTTAATATCTTTAAAAAATT
AACTATTGGCATTTAAGTTTAAGAATCACATTGACAGATCTAATAAAGCA
ATAAAGTATAGTAATTGTCATCTATATTAAGTATAAATATGTGTGTATAT
ATGTATGCATGTACATATATATATATAGGTGTTAGGTCTTTGTATGTACA
TGTATGTTCAGTTCATGTGTATGTATACACATGCTTGTAGGTATATATGT
GTGTGTTAGACTAGTGATACATGGCAGTTGGCAGAGTTACAGCTTTCTTT
TTATTTAAGAGAACATATTTTTTTCCTTTTTTTAAAAAAGTTTTGTGATT
CACCATTGGAAGAC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCTTGAGTATTCCGAGCTTCTGGGCTA
ATATTCACTTATCAGTGAATGTATATCATGTGTGTTCTTTTGTGATTGGG
TTAGTTCCATCTATTTGCCTAAGAATTTCAGAAATTCATTGTTTTTAATA
GCTGTGTAGTACTCCATTGTATTAATGTACCACATTCTCTATAACCATTA
ATCTGTTGAGGGACATCTGGGTTCTTCTCCACTTCTGGCTATTATAAATA
AGGCTTCTACGAACTTTTTTTAACATGTATCCTTATTACATGTTGGAGCA
TCTTCTGGGTGTATGCCCAGGAGTGGTATAGTTGGGTCATCCAATAGTAC
TATTTCTAGTTTTCTGAGGAACTGCCAAACTGATTTCCATAGTGGTTGTA
CAAGCTTGCAATCCCGCCAGCAATGGAGGAGTGTTCCTCTTTATCTACAT
CCTCACCAGCATCTGTTGTCACTTGAGTATTTGATCTTAGCCATTCTGAC
TGGTGTGAGGTGGAATCTCAGAGTTGTTTTGATTTGCATTTCCCTGACAA
CTAAGAATGTTGAAAATTTCTTTAGATGATTCTCGGCCATTCAGTATTCC
TCAGTTGAGAATTCTTTGTTTAGCTCTGTACTCCATTTTTAATAGGGTTA
GTTGGTTCTCTGGATTCTAACTACTTGAGTTCTTTGAC

Query= MSMg01no498_m08.b1 MSMg01no498_m08.b1 CHROMAT_FILE:
MSMg01no498_m08.b1 PHD_FILE: MSMg01no498_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:56 2005
         (601 letters)



>mm_chr3_33436367_33437367
          Length = 1001

 Score = 1098 bits (568), Expect = 0.0
 Identities = 590/598 (98%), Gaps = 4/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaattt-ttcgcaatcgtttgaaatgatgcagtctccacaaggagatggagtt 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattctaaatttgtt-gcaatcgtttgaaatgatgcagtctccacaaggagatggagtt 620

                                                                       
Query: 64  caaatgagtgagttgtctgccctttgggtaagtgacctccagggtgatcctagtccagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caaatgagtgagttgtctgccctttgggtaagtgacctccagggtgatcctagtccagga 560

                                                                       
Query: 124 agactttaaaggactgtctaaggtcaggtcttcctggtgaggaaagatttgtttccataa 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 agactttaaaggactgtctaaggtcaggtctttctggtgaggaaagatttgtttccataa 500

                                                                       
Query: 184 agtctgtcattccacatctgttggcttgaataacttcctgactcagggaagtttctcctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtctgtcattccacatctgttggcttgaataacttcctgactcagggaagtttctcctc 440

                                                                       
Query: 244 ttttctagttctttctatctttaccagaactctgattttgcacattcctaagtacctaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttctagttctttctatctttaccagaactctgattttgcacattcctaagtacctaag 380

                                                                       
Query: 304 atctttcttttgccttttccttgtatggtaccatgatttttctctctttgttaaatatat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atctttcttttgccttttccttgtatggtaccatgatttttctctctttgttaaatatat 320

                                                                       
Query: 364 cttccattctattagttaatatctttaaaaaattaactattggcatttaagtttaagaat 423
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 319 cttccatcctattagttaatatcttaaaaaaattaactattggcatttaagtttaagaat 260

                                                                       
Query: 424 cacattgacagatctaataaagcaataaagtatagtaattgtcatctatattaagtataa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacattgacagatctaataaagcaataaagtatagtaattgtcatctatattaagtataa 200

                                                                       
Query: 484 atatgtgtgtatatatgtatgcatgtacatatatatatataggtgttaggtctttgtatg 543
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 199 atatgtgtgtatatatgtatgcatgtac--atatatatataggtgttaggtctttgtatg 142

                                                                     
Query: 544 tacatgtatgttcagttcatgtgtatgtatacacatgcttgtaggtatatatgtgtgt 601
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 141 tacatgtatgttcagttcatgtgtatgtatacacatgcttataggtatatatgtgtgt 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)