Query= MSMg01no498_p12.b1 MSMg01no498_p12.b1 CHROMAT_FILE:
MSMg01no498_p12.b1 PHD_FILE: MSMg01no498_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:14 2005
(536 letters)
>mm_chr3_110205644_110206580
Length = 937
Score = 888 bits (459), Expect = 0.0
Identities = 474/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttgattttcttgcatattaatttgcgtgttgaggttagcatgggggtgagaa 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgattttgttgcatattaatttgcgtgttgaggttagcatgggggtgagaa 263
Query: 64 tggctaaaatattttctaaaccacatgctgttctcagaaatgttcttaagatgaatattc 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tggctaaaatattttctaaaccacatgctgttctcagaaatgttcttaaaatgaatattc 323
Query: 124 caaagctgtgtgattccagagactttttggcctgtatgaatatgtttgctttaagctgct 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 caaagctgtgtgattccagagactttttggcctgtatgaatctgtttgctttaagctgct 383
Query: 184 tgttttcttcttagatgactgtttttgagtcagaaaaatttagcatacatttccacattg 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 tgttttcttcttagatgactgtttttgagtgagaaaaatttagcatacatttccacattg 443
Query: 244 ttttctgcatttagtcaaaacagaagacaggaatttgtatctttttgaaacttcagacat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttctgcatttagtcaaaacagaagacaggaatttgtatctttttgaaacttcagacat 503
Query: 304 aaaaatggtatatcatgaatacttcagagggacagcctaatggtcattgaaaatacagct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaatggtatatcatgaatacttcagagggacagcctaatggtcattgaaaatacagct 563
Query: 364 gactatacagttaggcaggaaactcacagggaatcttgtaatggcaggaaaggaatgcag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gactatacagttaggcaggaaactcacagggaatcttgtaatggcaggaaaggaatgcag 623
Query: 424 tgtgtactgaggagagcatgtccagtttaatggagagaggtactgtgtagatc-agtag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 tgtgtactgaggagagcatgtccagtttaatggagagaggtactgtgtagatccagtag 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_p12.g1 MSMg01no498_p12.g1 CHROMAT_FILE:
MSMg01no498_p12.g1 PHD_FILE: MSMg01no498_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:14 2005
(325 letters)
>mm_chr3_110347017_110347741
Length = 725
Score = 590 bits (305), Expect = e-173
Identities = 320/325 (98%)
Strand = Plus / Minus
Query: 1 gcctctacaggcagtagctctgggtagctctgtatagaagttatgtggccactgaacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcctctacaggcagtagctctgggtagctctgtatagaagttatgtggccactgaacatt 466
Query: 61 gaaaaggctgtagagtttagagtaagggaatctctttacccttccttgatacaagttatg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 465 gaaaaggctgtagagtttagagtaagggaatctcttcacccttccttgatacaagttatg 406
Query: 121 taactaagcataaatgaccccaaacctttctttattcatgaaatgtctatgagaatgttg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 405 taactaagcataaatgaccccaaacctttctttattaatgaaatgtctatgagaatgttg 346
Query: 181 cctaagttcttcacttaacacaaactagggaaccataaagaggaggcactggagcctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cctaagttcttcacttaacacaaactagggaaccataaagaggaggcactggagcctcag 286
Query: 241 gccttccctcaacccaaggccatcctttagttccacgcctcaattctgcactgttccttt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 285 gccttccctcaacccaaggccatcctttagttccaagcctcaattctgcactgttccttt 226
Query: 301 ttcagtcaggaggcagcactcacct 325
||||| | |||||||||||||||||
Sbjct: 225 ttcaggctggaggcagcactcacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
