Query= MSMg01no499_c07.b1 MSMg01no499_c07.b1 CHROMAT_FILE:
MSMg01no499_c07.b1 PHD_FILE: MSMg01no499_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:27 2005
(529 letters)
>mm_chr3_7276794_7277721
Length = 928
Score = 592 bits (306), Expect = e-173
Identities = 337/348 (96%), Gaps = 3/348 (0%)
Strand = Plus / Minus
Query: 1 gaaagctttaattgatgttgtcatagcacagtgaatgatgaaggattttgttactatgat 60
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 347 gaaagctttacttgatgttgccatagcacagtgaatgatgaaggattttg-tactatgat 289
Query: 61 cccacaacttaccaattttagaggccttatcaagatagctaatttcttttaatgtatcag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 288 cccacaacttaccaattttagaggccttatcaagatagccaatttcttttaatgtatcag 229
Query: 121 agattattttttttaaaaacaaaaccataccagaaccaaataagatcctcttactgaagc 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 agattatttttttaaaaaacaaaaccataccagaaccaaataagatcctcttactgaagc 169
Query: 181 caccacacaggttggttatgatatacacaaatacctaggtggcatgggactggaag--ct 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 168 caccacacaggttggttatgatatacacaaatacctaggtggcatgggactggaagctct 109
Query: 239 cacccatgtgactatctttcttgatgacagaggacaccacgtaggtctatgcagccttcc 298
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 108 cacccatgtgactagctttcatgatgacagaggacaccacataggtctatgcagccttcc 49
Query: 299 atctaatgagatacatggccactggctatgttgtatgggaaactattt 346
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atctaatgtgatacatggccactggctatgttgtatgggaaactattt 1
Score = 240 bits (124), Expect = 2e-67
Identities = 136/140 (97%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 1 gaaagctttaattgatgttgtcatagcacagtgaatgatgaaggattttgttactatgat 60
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaaagctttacttgatgttgccatagcacagtgaatgatgaaggattttgttactatgat 467
Query: 61 cccacaacttaccaattttagaggccttatcaagatagctaatttcttttaatgtatcag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 cccacaacttaccaattttagaggccttatcaagatagccaatttcttttaatgtatcag 527
Query: 121 agattattttttttaaaaac 140
||||||||||||| ||||||
Sbjct: 528 agattattttttt-aaaaac 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_c07.g1 MSMg01no499_c07.g1 CHROMAT_FILE:
MSMg01no499_c07.g1 PHD_FILE: MSMg01no499_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:28 2005
(655 letters)
>mm_chr3_7069920_7070974
Length = 1055
Score = 741 bits (383), Expect = 0.0
Identities = 407/415 (98%)
Strand = Plus / Plus
Query: 241 agaaataagcatttttaactattcaatatctactctaaatcttcacagaaatcatttgtt 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaataagcattttaaactattcaatatctactctaaatcttcacagaaatcatttgtt 500
Query: 301 atacatattaaatatatttccagtacaataatctttaaatgtatccaattaactttgtat 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 atgcatattaaatatatttccagtacaataatctttaaatgtatccaatttactttgtat 560
Query: 361 cacactgtgttttatatcataaagttacctatagcattatagataaatactcagaatttc 420
|| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 561 catactgtgttttatatcataaagttacatatagcattataggtaaatactcagaatttc 620
Query: 421 ttcaccttaactcattaaccggacataaacattgcaaaaaagagtcagggatagggaaca 480
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ttcaccttaactcattaactggacataaacattgcaaaaaaaagtcagggatagggaaca 680
Query: 481 ataaaaggacttttaattcattagtgaagaattcatcttctcaacaaaagcaaataacat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaaggacttttaattcattagtgaagaattcatcttctcaacaaaagcaaataacat 740
Query: 541 gaaatgtttcacattgaatcagacagctaattgtcatttaaaaacatattaatcttctat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaatgtttcacattgaatcagacagctaattgtcatttaaaaacatattaatcttctat 800
Query: 601 tttattgtgtgcaaagctttttttttcctttttctattttttctctcttactctc 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttattgtgtgcaaagctttttttttcctttttctattttttctctcttactctc 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
