BAC Information

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BAC

Clone NameMSMg01-499F08
Chromosome3 (Build37)
Map Location 37,951,943 - 37,952,639
singlet/doubletsinglet
Overlap genenone
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
Downstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499F08.T7 (MSMg01no499_f08.b1)MSMg01-499F08.TJ (MSMg01no499_f08.g1)
ACCAG575441AG575442
length746765
length of high quality
(start - end)
707 (33 - 739)697 (61 - 757)
definitionCHROMAT_FILE: MSMg01no499_f08.b1 PHD_FILE: MSMg01no499_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:41 2005CHROMAT_FILE: MSMg01no499_f08.g1 PHD_FILE: MSMg01no499_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTAAACGACTCACTATAGGTCGAGAGATCGGCGGAATTCAAGGCCCATT
TCCAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAG
TAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAA
GGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGC
CAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAG
AGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGT
GACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTTGG
TGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCT
ACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCGTTC
TCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGA
AGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTA
AAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGG
ATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAA
TGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAG
CAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCACTTGTAAGAAAAAAGAAATCGCAAAGCTTCAAACAAACA
CCCCACAGAGTCAACTTTCCTGAGGGTGGCGGGCTCGGGCTCTTCCAGTA
AAGCCAAGTTTCTGTGAGTTGGCTAGGGAGGTGAGGCATGATGCCAGCAA
GCCTGATGACCGGAGTTCCAGTCCCAGAACTCATACATCTCAGAACTCAC
ATTGTGGTGAGAGAGAAGCAGCCCCTACAAGCTCCTCTGATCTCTCCGTG
CGTGCAGGGTTTGTGAGCCCCACTTAATAAAGAAATGTTTCAACGAAATC
CCCTTGAATAAGCTAACTGTTGCCCATTGTGTTGAGATTTTGTGCATTTT
TCCTTAAGAGTCATATAAAATAAGGAAAATGATTTTTCATAAATAACTCT
GTATTCAAAATAATACAAAATTAACTAGAATGTTACATTCATGATTATAA
TACAATAATTAGTTCAGAAGACATACCTATTAATAATATTCTAACACCAA
TATTATAAATGCATATTTAATTATTATACACTTTTTAAATATAAACAATA
TGTGGGTTTTGTTTGTTTCCAGTACAACAATCATCCAGTGATTTTCCATA
AAGCAATTGAAAAAAACTGCTCTAAATATTTCAAGCTGCAGTGCTTTTTA
AATAGATATTTTGGCTCTAAGTCTGACTCTCTTTTGTTATTAGCTAAATG
AAGTGTCTTAATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_f08.g1 MSMg01no499_f08.g1 CHROMAT_FILE:
MSMg01no499_f08.g1 PHD_FILE: MSMg01no499_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:41 2005
         (697 letters)



>mm_chr3_37951743_37952839
          Length = 1097

 Score = 1340 bits (693), Expect = 0.0
 Identities = 696/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtaagaaaaaagaaatcgcaaagcttcaaacaaacaccccacagagtcaactttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgtaagaaaaaagaaatcgcaaagcttcaaacaaacaccccacagagtcaactttcc 260

                                                                       
Query: 61  tgagggtggcgggctcgggctcttccagtaaagccaagtttctgtgagttggctagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggtggcgggctcgggctcttccagtaaagccaagtttctgtgagttggctagggag 320

                                                                       
Query: 121 gtgaggcatgatgccagcaagcctgatgaccggagttccagtcccagaactcatacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaggcatgatgccagcaagcctgatgaccggagttccagtcccagaactcatacatct 380

                                                                       
Query: 181 cagaactcacattgtggtgagagagaagcagcccctacaagctcctctgatctctccgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaactcacattgtggtgagagagaagcagcccctacaagctcctctgatctctccgtg 440

                                                                       
Query: 241 cgtgcagggtttgtgagccccacttaataaagaaatgtttcaacgaaatccccttgaata 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgcagggcttgtgagccccacttaataaagaaatgtttcaacgaaatccccttgaata 500

                                                                       
Query: 301 agctaactgttgcccattgtgttgagattttgtgcatttttccttaagagtcatataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctaactgttgcccattgtgttgagattttgtgcatttttccttaagagtcatataaaa 560

                                                                       
Query: 361 taaggaaaatgatttttcataaataactctgtattcaaaataatacaaaattaactagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaggaaaatgatttttcataaataactctgtattcaaaataatacaaaattaactagaa 620

                                                                       
Query: 421 tgttacattcatgattataatacaataattagttcagaagacatacctattaataatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttacattcatgattataatacaataattagttcagaagacatacctattaataatatt 680

                                                                       
Query: 481 ctaacaccaatattataaatgcatatttaattattatacactttttaaatataaacaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaacaccaatattataaatgcatatttaattattatacactttttaaatataaacaata 740

                                                                       
Query: 541 tgtgggttttgtttgtttccagtacaacaatcatccagtgattttccataaagcaattga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgggttttgtttgtttccagtacaacaatcatccagtgattttccataaagcaattga 800

                                                                       
Query: 601 aaaaaactgctctaaatatttcaagctgcagtgctttttaaatagatattttggctctaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaaactgctctaaatatttcaagctgcagtgctttttaaatagatattttggctctaa 860

                                                
Query: 661 gtctgactctcttttgttattagctaaatgaagtgtc 697
           |||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtctgactctcttttgttattagctaaatgaagtgtc 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)