BAC Information

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BAC

Clone NameMSMg01-499G23
Chromosome3 (Build37)
Map Location 107,466,827 - 107,467,453
singlet/doubletsinglet
Overlap geneAhcyl1
Upstream gene4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik
Downstream geneCsf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499G23.T7 (MSMg01no499_g23.b1)MSMg01-499G23.TJ (MSMg01no499_g23.g1)
ACCAG575517AG575518
length739739
length of high quality
(start - end)		627 (63 - 689)344 (59 - 402)
definitionCHROMAT_FILE: MSMg01no499_g23.b1 PHD_FILE: MSMg01no499_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:48 2005CHROMAT_FILE: MSMg01no499_g23.g1 PHD_FILE: MSMg01no499_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTA
GAGTTCAATCAGGATGTACTTTCTCCAAGTCCTCTTTAAGATCTCAGTTT
ACAATTTTTATTTTCTATTTTTGTGGCAAGTGTCAATCAAAAGTGGCACC
ATTTCTATAAAACTAACACCAGACAAGGTCTACAGTTCTGAACAGATTAT
ATAGTTATATTTGTTTCACCTTGGTCCAATTTATCATTCTTTCTTCCATC
TATATAGAGTTCCCTTCAAATAGTTTAGGTTGCAGAAGCACAGCTGCCCA
CAAGTTTGCTCTTAAAGGATAAACCCTAAAGATAGGGCTCAGTGTTTTAT
ACTGAGTAATGGCTCAAGAAATCAGCCGTCAGCATAAGCTGCGTGAGGCA
GAGCTGAGAAATTTTGCTTATGGCTCCAGTTCACTGATGCTATAAACTAT
GAGCTGGAAACATCAGAGTCTGAGACTAGTATTTTTCTAGCCTCAACTCT
TCACTCTTTGCTTCAAAGGTTCAAACGAGATGTTGGTAACTAACCACCTG
AGCTGTTCCTCAGGGTTAACAATAATTTTTTTCCTTAATTAAAAGAAATA
AAACAGAAATAAATGCTAAGGGACAAAATTCAACTTGCTAGAATGCAGTT
TAGTTAAAACTAGAACAATGAGAGAGACTGGTGGAAGGCTGGACTACAAA
CCCAAGTGAACCTACTGAGTTGAACAAGCAACACATCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATGTGTAGCTGTGGATAACCTTGGACTTTTGATCTTGCTTC
CACATTCCAAGTGCTGGGACTGCAGGTGTGCATCACCGAGCCCAGTTCAT
ACAGTGCTGGAGATCAAACTGAAGGCTCCATGCATGCTCAACAGGCTCTC
TGCTTGTGCTGCCACACCCACAGTTCCTAGCAATACAGTATTTTTAAAAA
GAAAGATTGACTTACTTGTGTGTGTGTATGATGAAAGAGAGAATGAGAGA
GATAATGAAGGAGAGAAAGAAGGAGAGGAGAGGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAANGNNNGNNGAGGNNAGAAGANAGGGGNGAANGANNAATTANGAAAGG
GGGGAAATGGAAATGGGGNGAATGAAAGAGNAAGAAGAAGATTATATTTT
TTGAGATGTTTTTTTAGTTTTTTTTTTTTTTTTTAATTTTTTAATATATT
GTTATTGAAATAATAAAATTTGTTTATAAGTTTTTGTATATTGTATATTT
TTATTTATTGAAAAATTATAAGGGTAATATTTTGTTATGATATATTTGTT
GTTTGTTTTATGATTAATTTTTTTTTTTANATTGTTATTTTTTAGTATTT
ATTGAGAATTTGTTAGATTAAGATATAATATTTGTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_g23.b1 MSMg01no499_g23.b1 CHROMAT_FILE:
MSMg01no499_g23.b1 PHD_FILE: MSMg01no499_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:48 2005
         (627 letters)



>mm_chr3_107466627_107467653
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgtactttctccaagtcctctttaagatctcagtttacaatttttattttctattttt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gatgtactttctccaagtcctctttaagatctcagtttataatttttattttctattttt 260

                                                                       
Query: 61  gtggcaagtgtcaatcaaaagtggcaccatttctataaaactaacaccagacaaggtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggcaagtgtcaatcaaaagtggcaccatttctataaaactaacaccagacaaggtcta 320

                                                                       
Query: 121 cagttctgaacagattatatagttatatttgtttcaccttggtccaatttatcattcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttctgaacagattatatagttatatttgtttcaccttggtccaatttatcattcttt 380

                                                                       
Query: 181 cttccatctatatagagttcccttcaaatagtttaggttgcagaagcacagctgcccaca 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 cttccatctatatagacttcccttcaaatagtttaggttgcagaagcacagatgcccaca 440

                                                                       
Query: 241 agtttgctcttaaaggataaaccctaaagatagggctcagtgttttatactgagtaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttgctcttaaaggataaaccctaaagatagggctcagtgttttatactgagtaatgg 500

                                                                       
Query: 301 ctcaagaaatcagccgtcagcataagctgcgtgaggcagagctgagaaattttgcttatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaagaaatcagccgtcagcataagctgcgtgaggcagagctgagaaattttgcttatg 560

                                                                       
Query: 361 gctccagttcactgatgctataaactatgagctggaaacatcagagtctgagactagtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctccagttcactgatgctataaactatgagctggaaacatcagagtctgagactagtat 620

                                                                       
Query: 421 ttttctagcctcaactcttcactctttgcttcaaaggttcaaacgagatgttggtaacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttctagcctcaactcttcactctttgcttcaaaggttcaaacgagatgttggtaacta 680

                                                                       
Query: 481 accacctgagctgttcctcagggttaacaataatttttttccttaattaaaagaaataaa 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 accacctgagctgttcctcagggttaacaataattttttttcttaattaaaagaaataaa 740

                                                                       
Query: 541 acagaaataaatgctaagggacaaaattcaacttgctagaatgcagtttagttaaaacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagaaataaatgctaagggacaaaattcaacttgctagaatgcagtttagttaaaacta 800

                                      
Query: 601 gaacaatgagagagactggtggaaggc 627
           |||||||||||||||||||||||||||
Sbjct: 801 gaacaatgagagagactggtggaaggc 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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