Query= MSMg01no499_j11.b1 MSMg01no499_j11.b1 CHROMAT_FILE:
MSMg01no499_j11.b1 PHD_FILE: MSMg01no499_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
(373 letters)
>mm_chr3_93322675_93323447
Length = 773
Score = 714 bits (369), Expect = 0.0
Identities = 372/373 (99%)
Strand = Plus / Minus
Query: 1 cacctgcactgatagagtttacatccccactccctttttccattgattttgcaactgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cacctgcactgatagagtttacatccccactccctttttccattgattttgcaactgggc 350
Query: 61 ccttgccctccaataaaaacatatttaatcaataaaaacacattttcccaatgtgcaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccttgccctccaataaaaacatatttaatcaataaaaacacattttcccaatgtgcaatt 290
Query: 121 ttgattgattaactgcttactttagaacaaaacacacaataaaagaaacaaagtaactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttgattgattaactgcttactttagaacaaaacacacaataaaagaaacaaagtaactta 230
Query: 181 ctaatacttttataccaaaccaaactgctggggacagaaagatggctcagagggtaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ctaatacttttataccaaaccaaactgctggggacagaaagatggctcagagggtaaggg 170
Query: 241 tgcatcctccaagcctgttaacctggatttgatccctggaacccaaatagtaaaaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgcatcctccaagcctgttaacctggatttgatccctggaacccaaatagtaaaaaaaga 110
Query: 301 gaaccaatttctacatgctggccttaaacctccacatgtgtgttatggtgagtgcccccc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gaaccaatttctacatgctgaccttaaacctccacatgtgtgttatggtgagtgcccccc 50
Query: 361 taataattaatag 373
|||||||||||||
Sbjct: 49 taataattaatag 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_j11.g1 MSMg01no499_j11.g1 CHROMAT_FILE:
MSMg01no499_j11.g1 PHD_FILE: MSMg01no499_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:00 2005
(244 letters)
>mm_chr3_93165086_93165729
Length = 644
Score = 418 bits (216), Expect = e-121
Identities = 237/250 (94%), Gaps = 12/250 (4%)
Strand = Plus / Plus
Query: 1 agagcttcagctatattccactacaatgttcttgtccaagaagagtgaggagttgttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcttcagctatattccactacaatgttcttgtccaagaagagtgaggagttgttttg 260
Query: 61 cacaattacccttgcttcagcatttcctccttcccctcacaccagatcccttgggtggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaattacccttgcttcagcatttcctccttcccctcacaccagatcccttgggtggca 320
Query: 121 cattctaaagtacaacaactcctcactcttcttggacaagaacaatgtagaggtatat-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cattctaaagtacaacaactcctcactcttcttggacaagaacaatgtagaggtacatag 380
Query: 179 -tttttttg---ttctgaactcaaatcaaagagttttaagaaagggcaataccatgtggt 234
| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ct------gaagttctgaactcaaatcaaagagttttaagaaagggcaataccatgtggt 434
Query: 235 aaacactata 244
||||||||||
Sbjct: 435 aaacactata 444
Score = 72.3 bits (37), Expect = 3e-17
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 5 cttcagctatattccactacaatgttcttgtccaagaagagtgaggagttgtt 57
|||||||||| | || ||||| |||||||||||||||||||||||||||||||
Sbjct: 386 cttcagctatgtacctctacattgttcttgtccaagaagagtgaggagttgtt 334
Score = 64.5 bits (33), Expect = 6e-15
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 134 aacaactcctcactcttcttggacaagaacaatgtag 170
||||||||||||||||||||||||||||||| |||||
Sbjct: 257 aacaactcctcactcttcttggacaagaacattgtag 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
