Query= MSMg01no499_k22.b1 MSMg01no499_k22.b1 CHROMAT_FILE:
MSMg01no499_k22.b1 PHD_FILE: MSMg01no499_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:07 2005
(680 letters)
>mm_chr3_17179088_17180167
Length = 1080
Score = 590 bits (305), Expect = e-172
Identities = 331/341 (97%), Gaps = 5/341 (1%)
Strand = Plus / Minus
Query: 5 aattcattttgaaattc--tcctggagatgtcccactatttcctgacttttcagaggata 62
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aattcattttgaaa--caatcctggagatgtcccactatttcctgacttttcagaggata 286
Query: 63 gcagtaaaaacataatgtcttcatatgtttgaggtgatatttttcaagaagaaaatgatc 122
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 285 gcagtaaaaacataatgtcttcatatttttgaggtgatatttttcaaggagaaaatgatc 226
Query: 123 tctttgttactagttcatttttatttttattagatattttcttcatttacatttcaaatg 182
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctttgttactagttca-ttttatttttattagatattttcttcatttacatttcaaatg 167
Query: 183 ctatcccgaaagtcccttataacctccactgccctgctccccaacccacctactcctgct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ctatcccgaaagtcccttataacctccactgccctgctccccaacccacctactcctgct 107
Query: 243 tcctggccctggcattcccctgtactggggcacataatcttcacaagacaaagggcctct 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 106 tcctggccctggcattcccctgtactggggcacataatcttcacaagaccaagggcctct 47
Query: 303 cctctcaatgatggccaactaggccatcttttgctacatat 343
|||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 46 cctcccaatgatggccaactaggccatcttttgctatatat 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_k22.g1 MSMg01no499_k22.g1 CHROMAT_FILE:
MSMg01no499_k22.g1 PHD_FILE: MSMg01no499_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:07 2005
(635 letters)
>mm_chr3_17068018_17069052
Length = 1035
Score = 1122 bits (580), Expect = 0.0
Identities = 619/632 (97%)
Strand = Plus / Plus
Query: 4 tgcctctaagctctttagcaattttcatctttaatatattttgctgtcttttaccttgca 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 tgcctctaagctctttagcaattttcatctttattatattttgctgtcttttaccttgca 263
Query: 64 aatgccaggtttaaggcagctaggcagccaaagaaataacagctgatttgcttcttagta 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 aatgccaggtttaaggcagctaggcagccaaataaataacagctgatttgcttcttagta 323
Query: 124 tttgttttatttctacgtattttattttcaagtttacataaaatttggttattgtttgaa 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 tttgttttatttctacgtattttattttcaattttacataaaatttggttattgtttgaa 383
Query: 184 ataagagatgattaagcataaagcacctcagtggtggtgtgattatcatactttgcagag 243
||||||||||||||||| ||||||||||| ||| || |||||||||||||| ||||||||
Sbjct: 384 ataagagatgattaagcgtaaagcacctctgtgatgttgtgattatcatacgttgcagag 443
Query: 244 ctcaggatcagattttcaccatgttgttttccttcctttgtacaaaatgaaacctctttg 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 ctcaggatcagattttcaccatgttgttttccttcctttgtacaaaataaaacctctttg 503
Query: 304 ttcaggttgaagtataagattagatactaatttgtttccttgaatagtagagcagtcttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcaggttgaagtataagattagatactaatttgtttccttgaatagtagagcagtcttc 563
Query: 364 agtgcagtacaaagttatgggcttatctggtaggactgtgtttgaaagacatgctggtat 423
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 agcgcagtacaaagttatgggcttatctggtaagactgtgtttgaaagacatgctggtat 623
Query: 424 tccaagagataagagcaactagctttgttttccaaaattattcagaacagaaaaaaaaat 483
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 tccaagagataagagcaactagctttgttttcccaaattattcagaacagaaaaaaaaat 683
Query: 484 aactggctgattttctgatatgcagataaatatcatgtattatttaaacaccaatagcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aactggctgattttctgatatgcagataaatatcatgtattatttaaacaccaatagcat 743
Query: 544 tccaggtacctaaatacctcttttctttactgggaatattgaagctcataaaacagaaag 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 744 tccaggtacctaaatacctcttttctttactgggaatattgaagctcataaaacagaagg 803
Query: 604 aatcatacttggtacagatattatatggaacc 635
||||||||||||||||||||||||||||||||
Sbjct: 804 aatcatacttggtacagatattatatggaacc 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
