Query= MSMg01no500_h17.b1 MSMg01no500_h17.b1 CHROMAT_FILE:
MSMg01no500_h17.b1 PHD_FILE: MSMg01no500_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:07 2005
(616 letters)
>mm_chr3_51291636_51292647
Length = 1012
Score = 1098 bits (568), Expect = 0.0
Identities = 603/624 (96%), Gaps = 16/624 (2%)
Strand = Plus / Plus
Query: 5 gaattccaggacatctacggctatacagaaatcctctcttgaacaaccaaaaaattacat 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacatccagggctatacagaaatcctctcttgaacaaccaaaaaattacat 264
Query: 65 taaataaaaaaatggtggtggcggcggcggcggcggcgaatgggtattaggaatagtccc 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaataaaaaaatggtggtggtggcggcggcggcggcgaatgggtattaggaatagtccc 324
Query: 125 ttacacataggatctgatttttaagtcagtcgctggcttagaataaaggatgtactttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacacataggatctgatttttaagtcagtcgctggcttagaataaaggatgtactttct 384
Query: 185 tttttgaaaacaaacaaacaaacaaaaaatctcacataatggttatggttccagagctgg 244
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttgaaaacaaacaaacaaa----aaatctcacataatggttatggttccagagctgg 440
Query: 245 gtgtggtggtatccatcttcagtcccaacacttacgaagcagaggcaggcagatctgaga 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gtgtggtggtatccatcttcagtcccaacactcacgaagcagaggcaggcagatctgaga 500
Query: 305 ttgaggtcagcctggtctacacagcaagttctaggccatctagcaaacagtgagaccctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaggtcagcctggtctacacagcaagttctaggccatctagcaaacagtgagaccctg 560
Query: 365 tctcaaacacagacacacataaacatacacacagtttatgtacatttttgtgtgagtgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcaaacacagacacacataaacatacacacagtttatgtacatttttgtgtgagtgtg 620
Query: 425 cacatgttcatgcacatgt------------atgtagaggccagaggttgatgttacatg 472
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 cacatgttcatgcacatgttcatgcacatgtatgtagaggccagaggttgatgttacatg 680
Query: 473 tctccctcaattgctctctactgctgtgttttttgagacagggcctctctgaaagtggaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctccctcaattgctctctactgctgtgttttttgagacagggcctctctgaaagtggaa 740
Query: 533 cttatatccccagccctaccttgcactcacgaacctcctgtctttacctcctgggcgctg 592
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 cttatatccccagccctaccttgcactcatgaacctcctgtctttacctcctgggcgctg 800
Query: 593 ggattgcaggcaggcacacctggt 616
||||||||||||||||||||||||
Sbjct: 801 ggattgcaggcaggcacacctggt 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1012
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1002
Effective search space: 607212
Effective search space used: 607212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_h17.g1 MSMg01no500_h17.g1 CHROMAT_FILE:
MSMg01no500_h17.g1 PHD_FILE: MSMg01no500_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:08 2005
(573 letters)
>mm_chr3_51477073_51478045
Length = 973
Score = 1093 bits (565), Expect = 0.0
Identities = 571/573 (99%)
Strand = Plus / Minus
Query: 1 cacaccaggaagagtaactggaaaggtcttcgatagggggccagtagggggagcaagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cacaccaggaagagtaactggaaaggtcttcgatagggggccagtagggggagcaagtgt 714
Query: 61 cctgcttggcctggacttgagatgttatctagaaggtggaacttcaagttttgaagccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cctgcttggcctggacttgagatgttatctagaaggtggaacttcaagttttgaagccag 654
Query: 121 tacagtcctgatcggttgccctggtttgtccggcgccaaaatgttttaggagacctgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tacagtcctgatcggttgccctggtttgtccggcgccaaaatgttttaggagacctgagg 594
Query: 181 cttaagggagagactggcaaaagccggagaaaagctgagaactctgggtaccgccgtggt 240
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 593 cttaagggagagaatggcaaaagccagagaaaagctgagaactctgggtaccgccgtggt 534
Query: 241 gatcacgtgcgctcagcgttcccccacactgggtggagcaatggctgcagactgggcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gatcacgtgcgctcagcgttcccccacactgggtggagcaatggctgcagactgggcctt 474
Query: 301 gcccggggtgactccagtgagtgggcagccttcggctccgtgtctaatgcacacacagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gcccggggtgactccagtgagtgggcagccttcggctccgtgtctaatgcacacacagaa 414
Query: 361 ggaagtagtccgaatccatccacagacactgtgcagcacggcccgcgtgcacagactgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggaagtagtccgaatccatccacagacactgtgcagcacggcccgcgtgcacagactgag 354
Query: 421 gagggcaaatgcacccccacaggtacaaagggagcactttgatcaaactagggcagggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gagggcaaatgcacccccacaggtacaaagggagcactttgatcaaactagggcagggcc 294
Query: 481 gtgtgtgtgtctgcacagatcaaaccatattataaaacacaggctcaaggcttctcagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtgtgtgtgtctgcacagatcaaaccatattataaaacacaggctcaaggcttctcagtc 234
Query: 541 acagggaaccactgtaacactctctcctgggcc 573
|||||||||||||||||||||||||||||||||
Sbjct: 233 acagggaaccactgtaacactctctcctgggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
