AATTAGTCTCATGTCACNTAACGACTCCTATAGGTTTCAAATCCGCGGAA
TTCCAAGCTTTATATCTGTTGTTTTTCTAACAAACTTTTGTTTGTTTTGC
AGGTGATATAAAAAATCCTACTAAAGTAATTCCCAAATCCGTGATTTCTT
GTCTTTCCATCATAGTTGTATTTTATGTACTGGTTAATGTATCCTATCTG
GTAGTTTTGACACCAAAGGAAATTACGACTTCAGGTATGGTTTGGTATAA
AGAAAACTGAAATAATTACTTTCTTCCCCAAATGAAGTTGCGTTGTCCTG
TGCATGGATGCTTTAGGCTCTAAAATAGCACTTCTAGAACATACTTCATG
TCCTCTGCTTATCCCATTATGCCACCTATACATTATCAGCCTCACCTGTG
ACTGTGTGCATTGCTATGTCTTCTAAGAGCTAAGTTCCTTGTATTTAAAT
GCCTTATGGGACCATGTTCAACACTATCTCATCTTACAGTGTTTTAAATG
CAGTTAAAAAAATCTAAAGATGCAATGGAAGGACTTGACTCAAATTCTGA
AAGAAATGATCCACTGAATAATAAACTGTGAGTTATAGGTCAGATGACCA
ACCGAAACAAAGCTCAATACATTAGTTTTTTAAGTAAACACAAGAAAATG
CTACGTTTGAAAGCATTATGATAAAAAGATAAAGGAATAAAACTAGAATT
TCATTGAATAGGTATA

ATGCTGTGGGTAGCTGGGGGCGCCTGGGCGTCCATTTANGTGCCTATANA
NGGTTCGCGAATTGACCATTCTATCTCTTGGACAAGCTCAGTTCTAGTGA
TCACTGCTTCCTTTAACTTATGAACTTGGTTTTTTNGGGGATTNGTGTGT
NNNCCTTTTGATAATTTGGGCCTGGGGGACTTTTTTTAAAAAAAAAAATT
TGTTNNGTGAATTTATCNNAATAACTAGTCCTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN
NNNNNNNNGGGGGGGGGGGGGGGNNGGGNNNNNNNNNNNNGGGGGGGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGN
NNNNNNNNNNNTTTTNNNNNNNNNNGGGNNNNNNNNNNNNNNNNNNNNNN
NTTTNNNNNNNNNNNNNNNNNNNNNNNNNNGGGNNNNNNNNNNGGGGGGG
GGGGGGGGGGGNGNNNNNNNNNNNNNGGGGGGGGGGGGGNNGGGGNNNNN
NGGGNGNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTT
NNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNN
NNNNNNNNNNNNNGNNGGGGTGGGGGTTTTTGTGTGTTT

Query= MSMg01no500_j24.b1 MSMg01no500_j24.b1 CHROMAT_FILE:
MSMg01no500_j24.b1 PHD_FILE: MSMg01no500_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:17 2005
         (658 letters)



>mm_chr3_14370543_14371599
          Length = 1057

 Score = 1185 bits (613), Expect = 0.0
 Identities = 650/669 (97%), Gaps = 15/669 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccaagcttta---tatctgttgtttttctaacaaacttttgtttgttttgcaggtga 57
           |||||||||||||   |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 193 attccaagctttacaatat--gttgtttttctaacaaacttttgtttgttttgcaggtga 250

                                                                       
Query: 58  tataaaaaatcctactaaagtaattcccaaatccgtgatttcttgtctttccatcatagt 117
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 tataaaaa-tcctactaaagtaattcccaaatccgtgatttcttgtctttccatcataat 309

                                                                       
Query: 118 tgtattttatgtactggttaatgtatcctatctggtagttttgacaccaaaggaaattac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtattttatgtactggttaatgtatcctatctggtagttttgacaccaaaggaaattac 369

                                                                       
Query: 178 gacttcaggtatggtttggtataaagaaaactgaaataattactttcttccccaaatgaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gacttcaggtatggtttggtataaagaaaactgaaataattactttcttccccaaatgaa 429

                                                                       
Query: 238 gttgcgttgtcctgtgcatggatgctttaggctctaaaatagcacttctagaacatactt 297
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 430 gttgcgttgtcctgtgcatggatgctctaggctctaaaatagcacttctagaacatactt 489

                                                                       
Query: 298 catgtcctctgcttatcccattatgccacctatacattatcagcctca--------cctg 349
           ||||||||||||||||||||||||||||||||||||||||||||||||        ||||
Sbjct: 490 catgtcctctgcttatcccattatgccacctatacattatcagcctcatgtacaaacctg 549

                                                                       
Query: 350 tgactgtgtgcattgctatgtcttctaagagctaagttccttgtatttaaatgccttatg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgactgtgtgcattgctatgtcttctaagagctaagttccttgtatttaaatgccttatg 609

                                                                       
Query: 410 ggaccatgttcaacactatctcatcttacagtgttttaaatgcagttaaaaaaatctaaa 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 610 ggaccatgttcaacactatctcatcttacagtgttttaaatgcagttaaaaaa-tctaaa 668

                                                                       
Query: 470 gatgcaatggaaggacttgactcaaattctgaaagaaatgatccactgaataataaactg 529
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 669 gatgcaatggaaggacttgactcaaattctgaaagaaatgatcctctgaataataaactg 728

                                                                       
Query: 530 tgagttataggtcagatgaccaaccgaaacaaagctcaatacattagttttttaagtaaa 589
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 729 tgagttataggtcagatgaccaaccgaaacaaagctcaatacattagtttttgaagtaaa 788

                                                                       
Query: 590 cacaagaaaatgctacgtttgaaagcattatgataaaaagataaaggaataaaactagaa 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cacaagaaaatgctacgtttgaaagcattatgataaaaagataaaggaataaaactagaa 848

                    
Query: 650 tttcattga 658
           |||||||||
Sbjct: 849 tttcattga 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space:   678456
Effective search space used:   678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)