Query= MSMg01no500_k06.b1 MSMg01no500_k06.b1 CHROMAT_FILE:
MSMg01no500_k06.b1 PHD_FILE: MSMg01no500_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
(599 letters)
>mm_chr3_8608899_8609897
Length = 999
Score = 1058 bits (547), Expect = 0.0
Identities = 592/623 (95%), Gaps = 26/623 (4%)
Strand = Plus / Minus
Query: 1 cacttagtctggctaatcttgataaagggtagtggaagcatcaagaggccccttcaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cacttagtctggctaatcttgataaagggtagtggaagcatcaagaggccccttcaccca 564
Query: 61 cctgcttgtcaccagtggttgtcatcagcagcctccctgatggatcacctttctgcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cctgcttgtcaccagtggttgtcatcagcagcctccctgatggatcacctttctgcctct 504
Query: 121 ggggaactcaaattagactaagagcaaagatacttgagccagctttgctggagtccctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggggaactcaaattagactaagagcaaagatacttgagccagctttgctggagtccctct 444
Query: 181 tctgagcagcctggaaactgttcaagacagtgacacagacttaagcaagacttgaaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctgagcagcctggaaactgttcaagacagtgacacagacttaagcaagacttgaaggga 384
Query: 241 ttgtgctcttgcatttgaagcatggttaaatgcgggattgagattgccctggaagcccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgtgctcttgcatttgaagcatggttaaatgcgggattgagattgccctggaagcccag 324
Query: 301 ttgcttttcccacagaattcctgggctacttggcagtcatgcctgagtcttctgatgaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgcttttcccacagaattcctgggctacttggcagtcatgcctgagtcttctgatgaca 264
Query: 361 tctcattcagtgtgggactatgacggtggaatatagactgaagaacaattttctttctct 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 tcccattcagtgtgggactatgacggtggaatatagactgaagaacaattttatttctct 204
Query: 421 gtttccgtc--------tgtccgtccgtctgtctgtctgtctgtctgtct---------- 462
||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 203 gtttccgtccatccgtctgtctgtctgtctgtctgtctgtctgtctgtctatctgtctct 144
Query: 463 --------ccctctctctccatttctctctcaatatgggctcatggtagccttcaagttg 514
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 143 gtctgtctccctctctctccatttctctctcaatatgggctcatggtaaccttcaagttg 84
Query: 515 ctgtggtagctgaggatggctttgaacttctgaccctcctgcctttgcctcacaggtgtg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ctgtggtagctgaggatggctttgaacttctgaccctcctgcctttgcctcacaggtgtg 24
Query: 575 caggaacaggctctgttcacact 597
|||||||||||||||||||||||
Sbjct: 23 caggaacaggctctgttcacact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_k06.g1 MSMg01no500_k06.g1 CHROMAT_FILE:
MSMg01no500_k06.g1 PHD_FILE: MSMg01no500_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
(389 letters)
>mm_chr3_8515656_8516444
Length = 789
Score = 719 bits (372), Expect = 0.0
Identities = 384/388 (98%)
Strand = Plus / Plus
Query: 1 atcaaggaatatcattaaaaagatcatgtatccgtctccctgtgcagtgagtggcagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaaggaatatcattaaaaagatcatgtatccgtctccctgtgcagtgagtggcagggc 260
Query: 61 agagacatgatacacttctggaaactctgtcctgcagcaatgatactaaacacacaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagacatgatacacttctggaaactctgtcctgcagcaatgatactaaacacacaatgt 320
Query: 121 ctcaaagacagcgttaaaaccaggatcccaaataacaattggcccaggcggttggtagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaagacagcgttaaaaccaggatcccaaataacaattggcccaggcggttggtagac 380
Query: 181 tacagggacagcccagaactggagtaaggttatcttttgtttgttgttttcagtgggtta 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagggacagcccagaactgcagtaaggttatcttttgtttgttgttttcagtgggtta 440
Query: 241 ttccaggactttctaggtctctggaagctggaaaaccttagattggtagttctcaacctt 300
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ttccaggactttccaggtctctggaagctggaaacccttagattggtagttctcaacctt 500
Query: 301 cctaatgctaccaccttttaatacaggtgtggtaactgtacattgtggtaacccctaatc 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 cctaatgctaccaccttttaatacagttgtggtaactgtacattgtggtaacccctaatc 560
Query: 361 ataaaattattttgttgctactttataa 388
||||||||||||||||||||||||||||
Sbjct: 561 ataaaattattttgttgctactttataa 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
